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1   package ca.uhn.fhir.jpa.term.loinc;
2   
3   /*-
4    * #%L
5    * HAPI FHIR JPA Server
6    * %%
7    * Copyright (C) 2014 - 2018 University Health Network
8    * %%
9    * Licensed under the Apache License, Version 2.0 (the "License");
10   * you may not use this file except in compliance with the License.
11   * You may obtain a copy of the License at
12   * 
13   *      http://www.apache.org/licenses/LICENSE-2.0
14   * 
15   * Unless required by applicable law or agreed to in writing, software
16   * distributed under the License is distributed on an "AS IS" BASIS,
17   * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
18   * See the License for the specific language governing permissions and
19   * limitations under the License.
20   * #L%
21   */
22  
23  import ca.uhn.fhir.jpa.entity.TermConcept;
24  import ca.uhn.fhir.jpa.term.IHapiTerminologyLoaderSvc;
25  import ca.uhn.fhir.jpa.term.IRecordHandler;
26  import org.apache.commons.csv.CSVRecord;
27  import org.hl7.fhir.r4.model.ConceptMap;
28  import org.hl7.fhir.r4.model.ValueSet;
29  
30  import java.util.*;
31  
32  import static org.apache.commons.lang3.StringUtils.trim;
33  
34  public class LoincUniversalOrderSetHandler extends BaseLoincHandler implements IRecordHandler {
35  
36  	public static final String VS_ID = "loinc-universal-order-set-vs";
37  	public static final String VS_URI = "http://loinc.org/vs/loinc-universal-order-set";
38  	public static final String VS_NAME = "LOINC Universal Order Set";
39  
40  	public LoincUniversalOrderSetHandler(Map<String, TermConcept> theCode2concept, List<ValueSet> theValueSets, List<ConceptMap> theConceptMaps, Properties theUploadProperties) {
41  		super(theCode2concept, theValueSets, theConceptMaps, theUploadProperties);
42  	}
43  
44  	@Override
45  	public void accept(CSVRecord theRecord) {
46  		String loincNumber = trim(theRecord.get("LOINC_NUM"));
47  		String displayName = trim(theRecord.get("LONG_COMMON_NAME"));
48  		String orderObs = trim(theRecord.get("ORDER_OBS"));
49  
50  		ValueSet valueSet = getValueSet(VS_ID, VS_URI, VS_NAME, null);
51  		addCodeAsIncludeToValueSet(valueSet, IHapiTerminologyLoaderSvc.LOINC_URI, loincNumber, displayName);
52  	}
53  
54  
55  }