/*
 * #%L
 * HAPI FHIR - Core Library
 * %%
 * Copyright (C) 2014 - 2024 Smile CDR, Inc.
 * %%
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 * http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 * #L%
 */
package ca.uhn.fhir.context;

import ca.uhn.fhir.context.api.AddProfileTagEnum;
import ca.uhn.fhir.context.support.DefaultProfileValidationSupport;
import ca.uhn.fhir.context.support.IValidationSupport;
import ca.uhn.fhir.fhirpath.IFhirPath;
import ca.uhn.fhir.i18n.HapiLocalizer;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.model.api.IElement;
import ca.uhn.fhir.model.api.IFhirVersion;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import ca.uhn.fhir.model.view.ViewGenerator;
import ca.uhn.fhir.narrative.INarrativeGenerator;
import ca.uhn.fhir.parser.DataFormatException;
import ca.uhn.fhir.parser.IParser;
import ca.uhn.fhir.parser.IParserErrorHandler;
import ca.uhn.fhir.parser.JsonParser;
import ca.uhn.fhir.parser.LenientErrorHandler;
import ca.uhn.fhir.parser.NDJsonParser;
import ca.uhn.fhir.parser.RDFParser;
import ca.uhn.fhir.parser.XmlParser;
import ca.uhn.fhir.rest.api.IVersionSpecificBundleFactory;
import ca.uhn.fhir.rest.client.api.IBasicClient;
import ca.uhn.fhir.rest.client.api.IGenericClient;
import ca.uhn.fhir.rest.client.api.IRestfulClient;
import ca.uhn.fhir.rest.client.api.IRestfulClientFactory;
import ca.uhn.fhir.system.HapiSystemProperties;
import ca.uhn.fhir.util.FhirTerser;
import ca.uhn.fhir.util.ReflectionUtil;
import ca.uhn.fhir.util.VersionUtil;
import ca.uhn.fhir.validation.FhirValidator;
import jakarta.annotation.Nonnull;
import jakarta.annotation.Nullable;
import org.apache.commons.lang3.Validate;
import org.apache.commons.lang3.exception.ExceptionUtils;
import org.apache.jena.riot.Lang;
import org.hl7.fhir.instance.model.api.IBase;
import org.hl7.fhir.instance.model.api.IBaseBundle;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IPrimitiveType;

import java.io.IOException;
import java.io.InputStream;
import java.lang.reflect.Method;
import java.lang.reflect.Modifier;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collection;
import java.util.Collections;
import java.util.EnumMap;
import java.util.Enumeration;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Map.Entry;
import java.util.Objects;
import java.util.Optional;
import java.util.Properties;
import java.util.Set;
import java.util.stream.Collectors;

/**
 * The FHIR context is the central starting point for the use of the HAPI FHIR API. It should be created once, and then
 * used as a factory for various other types of objects (parsers, clients, etc.).
 *
 * <p>
 * Important usage notes:
 * </p>
 * <ul>
 * <li>
 * Thread safety: <b>This class is thread safe</b> and may be shared between multiple processing
 * threads, except for the {@link #registerCustomType} and {@link #registerCustomTypes} methods.
 * </li>
 * <li>
 * Performance: <b>This class is expensive</b> to create, as it scans every resource class it needs to parse or encode
 * to build up an internal model of those classes. For that reason, you should try to create one FhirContext instance
 * which remains for the life of your application and reuse that instance. Note that it will not cause problems to
 * create multiple instances (ie. resources originating from one FhirContext may be passed to parsers originating from
 * another) but you will incur a performance penalty if a new FhirContext is created for every message you parse/encode.
 * </li>
 * </ul>
 */
public class FhirContext {

        private static final List<Class<? extends IBaseResource>> EMPTY_LIST = Collections.emptyList();
        private static final Map<FhirVersionEnum, FhirContext> ourStaticContexts =
                        Collections.synchronizedMap(new EnumMap<>(FhirVersionEnum.class));
        private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirContext.class);
        private final IFhirVersion myVersion;
        private final Map<String, Class<? extends IBaseResource>> myDefaultTypeForProfile = new HashMap<>();
        private final Set<PerformanceOptionsEnum> myPerformanceOptions = new HashSet<>();
        private final Collection<Class<? extends IBaseResource>> myResourceTypesToScan;
        private AddProfileTagEnum myAddProfileTagWhenEncoding = AddProfileTagEnum.ONLY_FOR_CUSTOM;
        private volatile Map<Class<? extends IBase>, BaseRuntimeElementDefinition<?>> myClassToElementDefinition =
                        Collections.emptyMap();
        private ArrayList<Class<? extends IBase>> myCustomTypes;
        private final Set<String> myCustomResourceNames = new HashSet<>();
        private volatile Map<String, RuntimeResourceDefinition> myIdToResourceDefinition = Collections.emptyMap();
        private volatile boolean myInitialized;
        private volatile boolean myInitializing = false;
        private HapiLocalizer myLocalizer = new HapiLocalizer();
        private volatile Map<String, BaseRuntimeElementDefinition<?>> myNameToElementDefinition = Collections.emptyMap();
        private volatile Map<String, RuntimeResourceDefinition> myNameToResourceDefinition = Collections.emptyMap();
        private volatile Map<String, Class<? extends IBaseResource>> myNameToResourceType;
        private volatile INarrativeGenerator myNarrativeGenerator;
        private volatile IParserErrorHandler myParserErrorHandler = new LenientErrorHandler();
        private ParserOptions myParserOptions = new ParserOptions();
        private volatile IRestfulClientFactory myRestfulClientFactory;
        private volatile RuntimeChildUndeclaredExtensionDefinition myRuntimeChildUndeclaredExtensionDefinition;
        private IValidationSupport myValidationSupport;
        private Map<FhirVersionEnum, Map<String, Class<? extends IBaseResource>>> myVersionToNameToResourceType =
                        Collections.emptyMap();
        private volatile Set<String> myResourceNames;
        private volatile Boolean myFormatXmlSupported;
        private volatile Boolean myFormatJsonSupported;
        private volatile Boolean myFormatNDJsonSupported;
        private volatile Boolean myFormatRdfSupported;
        private IFhirValidatorFactory myFhirValidatorFactory = FhirValidator::new;

        /**
         * @deprecated It is recommended that you use one of the static initializer methods instead
         * of this method, e.g. {@link #forDstu2()} or {@link #forDstu3()} or {@link #forR4()}
         */
        @Deprecated
        public FhirContext() {
                this(EMPTY_LIST);
        }

        /**
         * @deprecated It is recommended that you use one of the static initializer methods instead
         * of this method, e.g. {@link #forDstu2()} or {@link #forDstu3()} or {@link #forR4()}
         */
        @Deprecated
        public FhirContext(final Class<? extends IBaseResource> theResourceType) {
                this(toCollection(theResourceType));
        }

        /**
         * @deprecated It is recommended that you use one of the static initializer methods instead
         * of this method, e.g. {@link #forDstu2()} or {@link #forDstu3()} or {@link #forR4()}
         */
        @Deprecated
        public FhirContext(final Class<?>... theResourceTypes) {
                this(toCollection(theResourceTypes));
        }

        /**
         * @deprecated It is recommended that you use one of the static initializer methods instead
         * of this method, e.g. {@link #forDstu2()} or {@link #forDstu3()} or {@link #forR4()}
         */
        @Deprecated
        public FhirContext(final Collection<Class<? extends IBaseResource>> theResourceTypes) {
                this(null, theResourceTypes);
        }

        /**
         * In most cases it is recommended that you use one of the static initializer methods instead
         * of this method, e.g. {@link #forDstu2()} or {@link #forDstu3()} or {@link #forR4()}, but
         * this method can also be used if you wish to supply the version programmatically.
         */
        public FhirContext(final FhirVersionEnum theVersion) {
                this(theVersion, null);
        }

        private FhirContext(
                        final FhirVersionEnum theVersion, final Collection<Class<? extends IBaseResource>> theResourceTypes) {
                VersionUtil.getVersion();

                if (theVersion != null) {
                        if (!theVersion.isPresentOnClasspath()) {
                                throw new IllegalStateException(Msg.code(1680)
                                                + getLocalizer()
                                                                .getMessage(FhirContext.class, "noStructuresForSpecifiedVersion", theVersion.name()));
                        }
                        myVersion = theVersion.getVersionImplementation();
                } else if (FhirVersionEnum.DSTU2.isPresentOnClasspath()) {
                        myVersion = FhirVersionEnum.DSTU2.getVersionImplementation();
                } else if (FhirVersionEnum.DSTU2_HL7ORG.isPresentOnClasspath()) {
                        myVersion = FhirVersionEnum.DSTU2_HL7ORG.getVersionImplementation();
                } else if (FhirVersionEnum.DSTU2_1.isPresentOnClasspath()) {
                        myVersion = FhirVersionEnum.DSTU2_1.getVersionImplementation();
                } else if (FhirVersionEnum.DSTU3.isPresentOnClasspath()) {
                        myVersion = FhirVersionEnum.DSTU3.getVersionImplementation();
                } else if (FhirVersionEnum.R4.isPresentOnClasspath()) {
                        myVersion = FhirVersionEnum.R4.getVersionImplementation();
                } else if (FhirVersionEnum.R4B.isPresentOnClasspath()) {
                        myVersion = FhirVersionEnum.R4B.getVersionImplementation();
                } else {
                        throw new IllegalStateException(
                                        Msg.code(1681) + getLocalizer().getMessage(FhirContext.class, "noStructures"));
                }

                if (theVersion == null) {
                        ourLog.info(
                                        "Creating new FhirContext with auto-detected version [{}]. It is recommended to explicitly select a version for future compatibility by invoking FhirContext.forDstuX()",
                                        myVersion.getVersion().name());
                } else {
                        if (HapiSystemProperties.isUnitTestModeEnabled()) {
                                String calledAt = ExceptionUtils.getStackFrames(new Throwable())[4];
                                ourLog.info(
                                                "Creating new FHIR context for FHIR version [{}]{}",
                                                myVersion.getVersion().name(),
                                                calledAt);
                        } else {
                                ourLog.info(
                                                "Creating new FHIR context for FHIR version [{}]",
                                                myVersion.getVersion().name());
                        }
                }

                myResourceTypesToScan = theResourceTypes;

                /*
                 * Check if we're running in Android mode and configure the context appropriately if so
                 */
                try {
                        Class<?> clazz = Class.forName("ca.uhn.fhir.android.AndroidMarker");
                        ourLog.info("Android mode detected, configuring FhirContext for Android operation");
                        try {
                                Method method = clazz.getMethod("configureContext", FhirContext.class);
                                method.invoke(null, this);
                        } catch (Throwable e) {
                                ourLog.warn("Failed to configure context for Android operation", e);
                        }
                } catch (ClassNotFoundException e) {
                        ourLog.trace("Android mode not detected");
                }
        }

        /**
         * @since 5.6.0
         */
        public static FhirContext forDstu2Cached() {
                return forCached(FhirVersionEnum.DSTU2);
        }

        /**
         * @since 6.2.0
         */
        public static FhirContext forDstu2Hl7OrgCached() {
                return forCached(FhirVersionEnum.DSTU2_HL7ORG);
        }

        /**
         * @since 5.5.0
         */
        public static FhirContext forDstu3Cached() {
                return forCached(FhirVersionEnum.DSTU3);
        }

        /**
         * @since 5.5.0
         */
        public static FhirContext forR4Cached() {
                return forCached(FhirVersionEnum.R4);
        }

        /**
         * @since 6.1.0
         */
        public static FhirContext forR4BCached() {
                return forCached(FhirVersionEnum.R4B);
        }

        /**
         * @since 5.5.0
         */
        public static FhirContext forR5Cached() {
                return forCached(FhirVersionEnum.R5);
        }

        private String createUnknownResourceNameError(final String theResourceName, final FhirVersionEnum theVersion) {
                return getLocalizer().getMessage(FhirContext.class, "unknownResourceName", theResourceName, theVersion);
        }

        private void ensureCustomTypeList() {
                myClassToElementDefinition.clear();
                if (myCustomTypes == null) {
                        myCustomTypes = new ArrayList<>();
                }
        }

        /**
         * When encoding resources, this setting configures the parser to include
         * an entry in the resource's metadata section which indicates which profile(s) the
         * resource claims to conform to. The default is {@link AddProfileTagEnum#ONLY_FOR_CUSTOM}.
         *
         * @see #setAddProfileTagWhenEncoding(AddProfileTagEnum) for more information
         */
        public AddProfileTagEnum getAddProfileTagWhenEncoding() {
                return myAddProfileTagWhenEncoding;
        }

        /**
         * When encoding resources, this setting configures the parser to include
         * an entry in the resource's metadata section which indicates which profile(s) the
         * resource claims to conform to. The default is {@link AddProfileTagEnum#ONLY_FOR_CUSTOM}.
         * <p>
         * This feature is intended for situations where custom resource types are being used,
         * avoiding the need to manually add profile declarations for these custom types.
         * </p>
         * <p>
         * See <a href="http://jamesagnew.gihhub.io/hapi-fhir/doc_extensions.html">Profiling and Extensions</a>
         * for more information on using custom types.
         * </p>
         * <p>
         * Note that this feature automatically adds the profile, but leaves any profile tags
         * which have been manually added in place as well.
         * </p>
         *
         * @param theAddProfileTagWhenEncoding The add profile mode (must not be <code>null</code>)
         */
        public void setAddProfileTagWhenEncoding(final AddProfileTagEnum theAddProfileTagWhenEncoding) {
                Validate.notNull(theAddProfileTagWhenEncoding, "theAddProfileTagWhenEncoding must not be null");
                myAddProfileTagWhenEncoding = theAddProfileTagWhenEncoding;
        }

        Collection<RuntimeResourceDefinition> getAllResourceDefinitions() {
                validateInitialized();
                return myNameToResourceDefinition.values();
        }

        /**
         * Returns the default resource type for the given profile
         *
         * @see #setDefaultTypeForProfile(String, Class)
         */
        public Class<? extends IBaseResource> getDefaultTypeForProfile(final String theProfile) {
                validateInitialized();
                return myDefaultTypeForProfile.get(theProfile);
        }

        /**
         * Returns the scanned runtime model for the given type. This is an advanced feature which is generally only needed
         * for extending the core library.
         */
        @SuppressWarnings("unchecked")
        public BaseRuntimeElementDefinition<?> getElementDefinition(final Class<? extends IBase> theElementType) {
                validateInitialized();
                BaseRuntimeElementDefinition<?> retVal = myClassToElementDefinition.get(theElementType);
                if (retVal == null) {
                        retVal = scanDatatype((Class<? extends IElement>) theElementType);
                }
                return retVal;
        }

        /**
         * Returns the scanned runtime model for the given type. This is an advanced feature which is generally only needed
         * for extending the core library.
         * <p>
         * Note that this method is case insensitive!
         * </p>
         */
        @Nullable
        public BaseRuntimeElementDefinition<?> getElementDefinition(final String theElementName) {
                validateInitialized();
                return myNameToElementDefinition.get(theElementName.toLowerCase());
        }

        /**
         * Returns all element definitions (resources, datatypes, etc.)
         */
        public Collection<BaseRuntimeElementDefinition<?>> getElementDefinitions() {
                validateInitialized();
                return Collections.unmodifiableCollection(myClassToElementDefinition.values());
        }

        /**
         * This feature is not yet in its final state and should be considered an internal part of HAPI for now - use with
         * caution
         */
        public HapiLocalizer getLocalizer() {
                if (myLocalizer == null) {
                        myLocalizer = new HapiLocalizer();
                }
                return myLocalizer;
        }

        /**
         * This feature is not yet in its final state and should be considered an internal part of HAPI for now - use with
         * caution
         */
        public void setLocalizer(final HapiLocalizer theMessages) {
                myLocalizer = theMessages;
        }

        public INarrativeGenerator getNarrativeGenerator() {
                return myNarrativeGenerator;
        }

        public FhirContext setNarrativeGenerator(final INarrativeGenerator theNarrativeGenerator) {
                myNarrativeGenerator = theNarrativeGenerator;
                return this;
        }

        /**
         * Returns the parser options object which will be used to supply default
         * options to newly created parsers
         *
         * @return The parser options - Will not return <code>null</code>
         */
        public ParserOptions getParserOptions() {
                return myParserOptions;
        }

        /**
         * Sets the parser options object which will be used to supply default
         * options to newly created parsers
         *
         * @param theParserOptions The parser options object - Must not be <code>null</code>
         */
        public void setParserOptions(final ParserOptions theParserOptions) {
                Validate.notNull(theParserOptions, "theParserOptions must not be null");
                myParserOptions = theParserOptions;
        }

        /**
         * Get the configured performance options
         */
        public Set<PerformanceOptionsEnum> getPerformanceOptions() {
                return myPerformanceOptions;
        }

        // /**
        // * Return an unmodifiable collection containing all known resource definitions
        // */
        // public Collection<RuntimeResourceDefinition> getResourceDefinitions() {
        //
        // Set<Class<? extends IBase>> datatypes = Collections.emptySet();
        // Map<Class<? extends IBase>, BaseRuntimeElementDefinition<?>> existing = Collections.emptyMap();
        // HashMap<String, Class<? extends IBaseResource>> types = new HashMap<String, Class<? extends IBaseResource>>();
        // ModelScanner.scanVersionPropertyFile(datatypes, types, myVersion.getVersion(), existing);
        // for (int next : types.)
        //
        // return Collections.unmodifiableCollection(myIdToResourceDefinition.values());
        // }

        /**
         * Sets the configured performance options
         *
         * @see PerformanceOptionsEnum for a list of available options
         */
        public void setPerformanceOptions(final Collection<PerformanceOptionsEnum> theOptions) {
                myPerformanceOptions.clear();
                if (theOptions != null) {
                        myPerformanceOptions.addAll(theOptions);
                }
        }

        /**
         * Sets the configured performance options
         *
         * @see PerformanceOptionsEnum for a list of available options
         */
        public void setPerformanceOptions(final PerformanceOptionsEnum... thePerformanceOptions) {
                Collection<PerformanceOptionsEnum> asList = null;
                if (thePerformanceOptions != null) {
                        asList = Arrays.asList(thePerformanceOptions);
                }
                setPerformanceOptions(asList);
        }

        /**
         * Returns the scanned runtime model for the given type. This is an advanced feature which is generally only needed
         * for extending the core library.
         */
        public RuntimeResourceDefinition getResourceDefinition(final Class<? extends IBaseResource> theResourceType) {
                validateInitialized();
                Validate.notNull(theResourceType, "theResourceType can not be null");

                if (Modifier.isAbstract(theResourceType.getModifiers())) {
                        throw new IllegalArgumentException(Msg.code(1682)
                                        + "Can not scan abstract or interface class (resource definitions must be concrete classes): "
                                        + theResourceType.getName());
                }

                RuntimeResourceDefinition retVal = (RuntimeResourceDefinition) myClassToElementDefinition.get(theResourceType);
                if (retVal == null) {
                        retVal = scanResourceType(theResourceType);
                }

                return retVal;
        }

        public RuntimeResourceDefinition getResourceDefinition(
                        final FhirVersionEnum theVersion, final String theResourceName) {
                Validate.notNull(theVersion, "theVersion can not be null");
                validateInitialized();

                if (theVersion.equals(myVersion.getVersion())) {
                        return getResourceDefinition(theResourceName);
                }

                Map<String, Class<? extends IBaseResource>> nameToType = myVersionToNameToResourceType.get(theVersion);
                if (nameToType == null) {
                        nameToType = new HashMap<>();
                        Map<Class<? extends IBase>, BaseRuntimeElementDefinition<?>> existing = new HashMap<>();
                        ModelScanner.scanVersionPropertyFile(null, nameToType, theVersion, existing);

                        Map<FhirVersionEnum, Map<String, Class<? extends IBaseResource>>> newVersionToNameToResourceType =
                                        new HashMap<>();
                        newVersionToNameToResourceType.putAll(myVersionToNameToResourceType);
                        newVersionToNameToResourceType.put(theVersion, nameToType);
                        myVersionToNameToResourceType = newVersionToNameToResourceType;
                }

                Class<? extends IBaseResource> resourceType = nameToType.get(theResourceName.toLowerCase());
                if (resourceType == null) {
                        throw new DataFormatException(Msg.code(1683) + createUnknownResourceNameError(theResourceName, theVersion));
                }

                return getResourceDefinition(resourceType);
        }

        /**
         * Returns the scanned runtime model for the given type. This is an advanced feature which is generally only needed
         * for extending the core library.
         */
        public RuntimeResourceDefinition getResourceDefinition(final IBaseResource theResource) {
                validateInitialized();
                Validate.notNull(theResource, "theResource must not be null");
                return getResourceDefinition(theResource.getClass());
        }

        /**
         * Returns the name of a given resource class.
         */
        public String getResourceType(final Class<? extends IBaseResource> theResourceType) {
                return getResourceDefinition(theResourceType).getName();
        }

        /**
         * Returns the name of the scanned runtime model for the given type. This is an advanced feature which is generally only needed
         * for extending the core library.
         */
        public String getResourceType(final IBaseResource theResource) {
                return getResourceDefinition(theResource).getName();
        }

        /*
         * Returns the type of the scanned runtime model for the given type. This is an advanced feature which is generally only needed
         * for extending the core library.
         * <p>
         * Note that this method is case insensitive!
         * </p>
         *
         * @throws DataFormatException If the resource name is not known
         */
        public String getResourceType(final String theResourceName) throws DataFormatException {
                return getResourceDefinition(theResourceName).getName();
        }

        /*
         * Returns the scanned runtime model for the given type. This is an advanced feature which is generally only needed
         * for extending the core library.
         * <p>
         * Note that this method is case insensitive!
         * </p>
         *
         * @throws DataFormatException If the resource name is not known
         */
        public RuntimeResourceDefinition getResourceDefinition(final String theResourceName) throws DataFormatException {
                validateInitialized();
                Validate.notBlank(theResourceName, "theResourceName must not be blank");

                String resourceName = theResourceName.toLowerCase();
                RuntimeResourceDefinition retVal = myNameToResourceDefinition.get(resourceName);

                if (retVal == null) {
                        Class<? extends IBaseResource> clazz = myNameToResourceType.get(resourceName.toLowerCase());
                        if (clazz == null) {
                                // ***********************************************************************
                                // Multiple spots in HAPI FHIR and Smile CDR depend on DataFormatException
                                // being thrown by this method, don't change that.
                                // ***********************************************************************
                                throw new DataFormatException(
                                                Msg.code(1684) + createUnknownResourceNameError(theResourceName, myVersion.getVersion()));
                        }
                        if (IBaseResource.class.isAssignableFrom(clazz)) {
                                retVal = scanResourceType(clazz);
                        }
                }
                return retVal;
        }

        /**
         * Returns the scanned runtime model for the given type. This is an advanced feature which is generally only needed
         * for extending the core library.
         */
        public RuntimeResourceDefinition getResourceDefinitionById(final String theId) {
                validateInitialized();
                return myIdToResourceDefinition.get(theId);
        }

        /**
         * Returns the scanned runtime models. This is an advanced feature which is generally only needed for extending the
         * core library.
         */
        public Collection<RuntimeResourceDefinition> getResourceDefinitionsWithExplicitId() {
                validateInitialized();
                return myIdToResourceDefinition.values();
        }

        /**
         * Returns an unmodifiable set containing all resource names known to this
         * context
         *
         * @since 5.1.0
         */
        public Set<String> getResourceTypes() {
                Set<String> resourceNames = myResourceNames;
                if (resourceNames == null) {
                        resourceNames = buildResourceNames();
                        myResourceNames = resourceNames;
                }
                return resourceNames;
        }

        @Nonnull
        private Set<String> buildResourceNames() {
                Set<String> retVal = new HashSet<>();
                Properties props = new Properties();
                try (InputStream propFile = myVersion.getFhirVersionPropertiesFile()) {
                        props.load(propFile);
                } catch (IOException e) {
                        throw new ConfigurationException(Msg.code(1685) + "Failed to load version properties file", e);
                }
                Enumeration<?> propNames = props.propertyNames();
                while (propNames.hasMoreElements()) {
                        String next = (String) propNames.nextElement();
                        if (next.startsWith("resource.")) {
                                retVal.add(next.substring("resource.".length()).trim());
                        }
                }
                retVal.addAll(myCustomResourceNames);
                return retVal;
        }

        /**
         * Get the restful client factory. If no factory has been set, this will be initialized with
         * a new ApacheRestfulClientFactory.
         *
         * @return the factory used to create the restful clients
         */
        public IRestfulClientFactory getRestfulClientFactory() {
                if (myRestfulClientFactory == null) {
                        try {
                                myRestfulClientFactory = (IRestfulClientFactory) ReflectionUtil.newInstance(
                                                Class.forName("ca.uhn.fhir.rest.client.apache.ApacheRestfulClientFactory"),
                                                FhirContext.class,
                                                this);
                        } catch (ClassNotFoundException e) {
                                throw new ConfigurationException(
                                                Msg.code(1686) + "hapi-fhir-client does not appear to be on the classpath");
                        }
                }
                return myRestfulClientFactory;
        }

        /**
         * Set the restful client factory
         *
         * @param theRestfulClientFactory The new client factory (must not be null)
         */
        public void setRestfulClientFactory(final IRestfulClientFactory theRestfulClientFactory) {
                Validate.notNull(theRestfulClientFactory, "theRestfulClientFactory must not be null");
                this.myRestfulClientFactory = theRestfulClientFactory;
        }

        public RuntimeChildUndeclaredExtensionDefinition getRuntimeChildUndeclaredExtensionDefinition() {
                validateInitialized();
                return myRuntimeChildUndeclaredExtensionDefinition;
        }

        /**
         * Returns the validation support module configured for this context, creating a default
         * implementation if no module has been passed in via the {@link #setValidationSupport(IValidationSupport)}
         * method
         *
         * @see #setValidationSupport(IValidationSupport)
         */
        public IValidationSupport getValidationSupport() {
                IValidationSupport retVal = myValidationSupport;
                if (retVal == null) {
                        retVal = new DefaultProfileValidationSupport(this);

                        /*
                         * If hapi-fhir-validation is on the classpath, we can create a much more robust
                         * validation chain using the classes found in that package
                         */
                        String inMemoryTermSvcType =
                                        "org.hl7.fhir.common.hapi.validation.support.InMemoryTerminologyServerValidationSupport";
                        String commonCodeSystemsSupportType =
                                        "org.hl7.fhir.common.hapi.validation.support.CommonCodeSystemsTerminologyService";
                        if (ReflectionUtil.typeExists(inMemoryTermSvcType)) {
                                IValidationSupport inMemoryTermSvc = ReflectionUtil.newInstanceOrReturnNull(
                                                inMemoryTermSvcType,
                                                IValidationSupport.class,
                                                new Class<?>[] {FhirContext.class},
                                                new Object[] {this});
                                IValidationSupport commonCodeSystemsSupport = ReflectionUtil.newInstanceOrReturnNull(
                                                commonCodeSystemsSupportType,
                                                IValidationSupport.class,
                                                new Class<?>[] {FhirContext.class},
                                                new Object[] {this});
                                retVal = ReflectionUtil.newInstanceOrReturnNull(
                                                "org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain",
                                                IValidationSupport.class,
                                                new Class<?>[] {IValidationSupport[].class},
                                                new Object[] {new IValidationSupport[] {retVal, inMemoryTermSvc, commonCodeSystemsSupport}});
                                assert retVal != null
                                                : "Failed to instantiate "
                                                                + "org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain";
                        }

                        myValidationSupport = retVal;
                }
                return retVal;
        }

        /**
         * Sets the validation support module to use for this context. The validation support module
         * is used to supply underlying infrastructure such as conformance resources (StructureDefinition, ValueSet, etc)
         * as well as to provide terminology services to modules such as the validator and FluentPath executor
         */
        public void setValidationSupport(IValidationSupport theValidationSupport) {
                myValidationSupport = theValidationSupport;
        }

        public IFhirVersion getVersion() {
                return myVersion;
        }

        /**
         * Returns <code>true</code> if any default types for specific profiles have been defined
         * within this context.
         *
         * @see #setDefaultTypeForProfile(String, Class)
         * @see #getDefaultTypeForProfile(String)
         */
        public boolean hasDefaultTypeForProfile() {
                validateInitialized();
                return !myDefaultTypeForProfile.isEmpty();
        }

        /**
         * @return Returns <code>true</code> if the XML serialization format is supported, based on the
         * available libraries on the classpath.
         *
         * @since 5.4.0
         */
        public boolean isFormatXmlSupported() {
                Boolean retVal = myFormatXmlSupported;
                if (retVal == null) {
                        retVal = tryToInitParser(() -> newXmlParser());
                        myFormatXmlSupported = retVal;
                }
                return retVal;
        }

        /**
         * @return Returns <code>true</code> if the JSON serialization format is supported, based on the
         * available libraries on the classpath.
         *
         * @since 5.4.0
         */
        public boolean isFormatJsonSupported() {
                Boolean retVal = myFormatJsonSupported;
                if (retVal == null) {
                        retVal = tryToInitParser(() -> newJsonParser());
                        myFormatJsonSupported = retVal;
                }
                return retVal;
        }

        /**
         * @return Returns <code>true</code> if the NDJSON serialization format is supported, based on the
         * available libraries on the classpath.
         *
         * @since 5.6.0
         */
        public boolean isFormatNDJsonSupported() {
                Boolean retVal = myFormatNDJsonSupported;
                if (retVal == null) {
                        retVal = tryToInitParser(() -> newNDJsonParser());
                        myFormatNDJsonSupported = retVal;
                }
                return retVal;
        }

        /**
         * @return Returns <code>true</code> if the RDF serialization format is supported, based on the
         * available libraries on the classpath.
         *
         * @since 5.4.0
         */
        public boolean isFormatRdfSupported() {
                Boolean retVal = myFormatRdfSupported;
                if (retVal == null) {
                        retVal = tryToInitParser(() -> newRDFParser());
                        myFormatRdfSupported = retVal;
                }
                return retVal;
        }

        public IVersionSpecificBundleFactory newBundleFactory() {
                return myVersion.newBundleFactory(this);
        }

        /**
         * @since 2.2
         * @deprecated Deprecated in HAPI FHIR 5.0.0. Use {@link #newFhirPath()} instead.
         */
        @Deprecated
        public IFhirPath newFluentPath() {
                return newFhirPath();
        }

        /**
         * Creates a new FhirPath engine which can be used to evaluate
         * path expressions over FHIR resources. Note that this engine will use the
         * {@link IValidationSupport context validation support} module which is
         * configured on the context at the time this method is called.
         * <p>
         * In other words, you may wish to call {@link #setValidationSupport(IValidationSupport)} before
         * calling {@link #newFluentPath()}
         * </p>
         * <p>
         * Note that this feature was added for FHIR DSTU3 and is not available
         * for contexts configured to use an older version of FHIR. Calling this method
         * on a context for a previous version of fhir will result in an
         * {@link UnsupportedOperationException}
         * </p>
         *
         * @since 5.0.0
         */
        public IFhirPath newFhirPath() {
                return myVersion.createFhirPathExecutor(this);
        }

        /**
         * Create and return a new JSON parser.
         *
         * <p>
         * Thread safety: <b>Parsers are not guaranteed to be thread safe</b>. Create a new parser instance for every thread
         * or every message being parsed/encoded.
         * </p>
         * <p>
         * Performance Note: <b>This method is cheap</b> to call, and may be called once for every message being processed
         * without incurring any performance penalty
         * </p>
         */
        public IParser newJsonParser() {
                return new JsonParser(this, myParserErrorHandler);
        }

        /**
         * Create and return a new NDJSON parser.
         *
         * <p>
         * Thread safety: <b>Parsers are not guaranteed to be thread safe</b>. Create a new parser instance for every thread
         * or every message being parsed/encoded.
         * </p>
         * <p>
         * Performance Note: <b>This method is cheap</b> to call, and may be called once for every message being processed
         * without incurring any performance penalty
         * </p>
         * <p>
         * The NDJsonParser provided here is expected to translate between legal NDJson and FHIR Bundles.
         * In particular, it is able to encode the resources in a FHIR Bundle to NDJson, as well as decode
         * NDJson into a FHIR "collection"-type Bundle populated with the resources described in the NDJson.
         * It will throw an exception in the event where it is asked to encode to anything other than a FHIR Bundle
         * or where it is asked to decode into anything other than a FHIR Bundle.
         * </p>
         */
        public IParser newNDJsonParser() {
                return new NDJsonParser(this, myParserErrorHandler);
        }

        /**
         * Create and return a new RDF parser.
         *
         * <p>
         * Thread safety: <b>Parsers are not guaranteed to be thread safe</b>. Create a new parser instance for every thread
         * or every message being parsed/encoded.
         * </p>
         * <p>
         * Performance Note: <b>This method is cheap</b> to call, and may be called once for every message being processed
         * without incurring any performance penalty
         * </p>
         */
        public IParser newRDFParser() {
                return new RDFParser(this, myParserErrorHandler, Lang.TURTLE);
        }

        /**
         * Instantiates a new client instance. This method requires an interface which is defined specifically for your use
         * cases to contain methods for each of the RESTful operations you wish to implement (e.g. "read ImagingStudy",
         * "search Patient by identifier", etc.). This interface must extend {@link IRestfulClient} (or commonly its
         * sub-interface {@link IBasicClient}). See the <a
         * href="https://hapifhir.io/hapi-fhir/docs/client/introduction.html">RESTful Client</a> documentation for more
         * information on how to define this interface.
         *
         * <p>
         * Performance Note: <b>This method is cheap</b> to call, and may be called once for every operation invocation
         * without incurring any performance penalty
         * </p>
         *
         * @param theClientType The client type, which is an interface type to be instantiated
         * @param theServerBase The URL of the base for the restful FHIR server to connect to
         * @return A newly created client
         * @throws ConfigurationException If the interface type is not an interface
         */
        public <T extends IRestfulClient> T newRestfulClient(final Class<T> theClientType, final String theServerBase) {
                return getRestfulClientFactory().newClient(theClientType, theServerBase);
        }

        /**
         * Instantiates a new generic client. A generic client is able to perform any of the FHIR RESTful operations against
         * a compliant server, but does not have methods defining the specific functionality required (as is the case with
         * {@link #newRestfulClient(Class, String) non-generic clients}).
         *
         * <p>
         * Performance Note: This method performs an additional GET request to /metadata before
         * the desired request is performed.
         * </p>
         *
         * @param theServerBase The URL of the base for the restful FHIR server to connect to
         */
        public IGenericClient newRestfulGenericClient(final String theServerBase) {
                return getRestfulClientFactory().newGenericClient(theServerBase);
        }

        public FhirTerser newTerser() {
                return new FhirTerser(this);
        }

        /**
         * Create a new validator instance.
         * <p>
         * Note on thread safety: Validators are thread safe, you may use a single validator
         * in multiple threads. (This is in contrast to parsers)
         * </p>
         */
        public FhirValidator newValidator() {
                return myFhirValidatorFactory.newFhirValidator(this);
        }

        public ViewGenerator newViewGenerator() {
                return new ViewGenerator(this);
        }

        /**
         * Create and return a new XML parser.
         *
         * <p>
         * Thread safety: <b>Parsers are not guaranteed to be thread safe</b>. Create a new parser instance for every thread
         * or every message being parsed/encoded.
         * </p>
         * <p>
         * Performance Note: <b>This method is cheap</b> to call, and may be called once for every message being processed
         * without incurring any performance penalty
         * </p>
         */
        public IParser newXmlParser() {
                return new XmlParser(this, myParserErrorHandler);
        }

        /**
         * This method may be used to register a custom resource or datatype. Note that by using
         * custom types, you are creating a system that will not interoperate with other systems that
         * do not know about your custom type. There are valid reasons however for wanting to create
         * custom types and this method can be used to enable them.
         * <p>
         * <b>THREAD SAFETY WARNING:</b> This method is not thread safe. It should be called before any
         * threads are able to call any methods on this context.
         * </p>
         *
         * @param theType The custom type to add (must not be <code>null</code>)
         */
        public void registerCustomType(final Class<? extends IBase> theType) {
                Validate.notNull(theType, "theType must not be null");
                ensureCustomTypeList();
                myCustomTypes.add(theType);
                myResourceNames = null;
        }

        /**
         * This method may be used to register a custom resource or datatype. Note that by using
         * custom types, you are creating a system that will not interoperate with other systems that
         * do not know about your custom type. There are valid reasons however for wanting to create
         * custom types and this method can be used to enable them.
         * <p>
         * <b>THREAD SAFETY WARNING:</b> This method is not thread safe. It should be called before any
         * threads are able to call any methods on this context.
         * </p>
         *
         * @param theTypes The custom types to add (must not be <code>null</code> or contain null elements in the collection)
         */
        public void registerCustomTypes(final Collection<Class<? extends IBase>> theTypes) {
                Validate.notNull(theTypes, "theTypes must not be null");
                Validate.noNullElements(theTypes.toArray(), "theTypes must not contain any null elements");

                ensureCustomTypeList();

                myCustomTypes.addAll(theTypes);
                myResourceNames = null;
        }

        private BaseRuntimeElementDefinition<?> scanDatatype(final Class<? extends IElement> theResourceType) {
                ArrayList<Class<? extends IElement>> resourceTypes = new ArrayList<>();
                resourceTypes.add(theResourceType);
                Map<Class<? extends IBase>, BaseRuntimeElementDefinition<?>> defs = scanResourceTypes(resourceTypes);
                return defs.get(theResourceType);
        }

        private RuntimeResourceDefinition scanResourceType(final Class<? extends IBaseResource> theResourceType) {
                ArrayList<Class<? extends IElement>> resourceTypes = new ArrayList<>();
                resourceTypes.add(theResourceType);
                Map<Class<? extends IBase>, BaseRuntimeElementDefinition<?>> defs = scanResourceTypes(resourceTypes);
                return (RuntimeResourceDefinition) defs.get(theResourceType);
        }

        private synchronized Map<Class<? extends IBase>, BaseRuntimeElementDefinition<?>> scanResourceTypes(
                        final Collection<Class<? extends IElement>> theResourceTypes) {
                List<Class<? extends IBase>> typesToScan = new ArrayList<>();
                if (theResourceTypes != null) {
                        typesToScan.addAll(theResourceTypes);
                }
                if (myCustomTypes != null) {
                        typesToScan.addAll(myCustomTypes);

                        myCustomResourceNames.addAll(myCustomTypes.stream()
                                        .map(customType -> Optional.ofNullable(customType.getAnnotation(ResourceDef.class))
                                                        .map(ResourceDef::name)
                                                        .orElse(null)) // This will be caught by the call to ModelScanner
                                        .filter(Objects::nonNull)
                                        .collect(Collectors.toSet()));

                        myCustomTypes = null;
                }

                ModelScanner scanner = new ModelScanner(this, myVersion.getVersion(), myClassToElementDefinition, typesToScan);
                if (myRuntimeChildUndeclaredExtensionDefinition == null) {
                        myRuntimeChildUndeclaredExtensionDefinition = scanner.getRuntimeChildUndeclaredExtensionDefinition();
                }

                Map<String, BaseRuntimeElementDefinition<?>> nameToElementDefinition = new HashMap<>();
                nameToElementDefinition.putAll(myNameToElementDefinition);
                for (Entry<String, BaseRuntimeElementDefinition<?>> next :
                                scanner.getNameToElementDefinitions().entrySet()) {
                        if (!nameToElementDefinition.containsKey(next.getKey())) {
                                nameToElementDefinition.put(next.getKey().toLowerCase(), next.getValue());
                        }
                }

                Map<String, RuntimeResourceDefinition> nameToResourceDefinition = new HashMap<>();
                nameToResourceDefinition.putAll(myNameToResourceDefinition);
                for (Entry<String, RuntimeResourceDefinition> next :
                                scanner.getNameToResourceDefinition().entrySet()) {
                        if (!nameToResourceDefinition.containsKey(next.getKey())) {
                                nameToResourceDefinition.put(next.getKey(), next.getValue());
                        }
                }

                Map<Class<? extends IBase>, BaseRuntimeElementDefinition<?>> classToElementDefinition = new HashMap<>();
                classToElementDefinition.putAll(myClassToElementDefinition);
                classToElementDefinition.putAll(scanner.getClassToElementDefinitions());
                for (BaseRuntimeElementDefinition<?> next : classToElementDefinition.values()) {
                        if (next instanceof RuntimeResourceDefinition) {
                                if ("Bundle".equals(next.getName())) {
                                        if (!IBaseBundle.class.isAssignableFrom(next.getImplementingClass())) {
                                                throw new ConfigurationException(Msg.code(1687)
                                                                + "Resource type declares resource name Bundle but does not implement IBaseBundle");
                                        }
                                }
                        }
                }

                Map<String, RuntimeResourceDefinition> idToElementDefinition = new HashMap<>();
                idToElementDefinition.putAll(myIdToResourceDefinition);
                idToElementDefinition.putAll(scanner.getIdToResourceDefinition());

                myNameToElementDefinition = nameToElementDefinition;
                myClassToElementDefinition = classToElementDefinition;
                myIdToResourceDefinition = idToElementDefinition;
                myNameToResourceDefinition = nameToResourceDefinition;

                myNameToResourceType = scanner.getNameToResourceType();

                myInitialized = true;
                return classToElementDefinition;
        }

        /**
         * Sets the default type which will be used when parsing a resource that is found to be
         * of the given profile.
         * <p>
         * For example, this method is invoked with the profile string of
         * <code>"http://example.com/some_patient_profile"</code> and the type of <code>MyPatient.class</code>,
         * if the parser is parsing a resource and finds that it declares that it conforms to that profile,
         * the <code>MyPatient</code> type will be used unless otherwise specified.
         * </p>
         *
         * @param theProfile The profile string, e.g. <code>"http://example.com/some_patient_profile"</code>. Must not be
         *                   <code>null</code> or empty.
         * @param theClass   The resource type, or <code>null</code> to clear any existing type
         */
        public void setDefaultTypeForProfile(final String theProfile, final Class<? extends IBaseResource> theClass) {
                Validate.notBlank(theProfile, "theProfile must not be null or empty");
                if (theClass == null) {
                        myDefaultTypeForProfile.remove(theProfile);
                } else {
                        myDefaultTypeForProfile.put(theProfile, theClass);
                }
        }

        /**
         * Sets a parser error handler to use by default on all parsers
         *
         * @param theParserErrorHandler The error handler
         */
        public FhirContext setParserErrorHandler(final IParserErrorHandler theParserErrorHandler) {
                Validate.notNull(theParserErrorHandler, "theParserErrorHandler must not be null");
                myParserErrorHandler = theParserErrorHandler;
                return this;
        }

        /**
         * Set the factory method used to create FhirValidator instances
         *
         * @param theFhirValidatorFactory
         * @return this
         * @since 5.6.0
         */
        public FhirContext setFhirValidatorFactory(IFhirValidatorFactory theFhirValidatorFactory) {
                myFhirValidatorFactory = theFhirValidatorFactory;
                return this;
        }

        @SuppressWarnings({"cast"})
        private List<Class<? extends IElement>> toElementList(
                        final Collection<Class<? extends IBaseResource>> theResourceTypes) {
                if (theResourceTypes == null) {
                        return null;
                }
                List<Class<? extends IElement>> resTypes = new ArrayList<>();
                for (Class<? extends IBaseResource> next : theResourceTypes) {
                        resTypes.add(next);
                }
                return resTypes;
        }

        private void validateInitialized() {
                // See #610
                if (!myInitialized) {
                        synchronized (this) {
                                if (!myInitialized && !myInitializing) {
                                        myInitializing = true;
                                        try {
                                                scanResourceTypes(toElementList(myResourceTypesToScan));
                                        } catch (Exception e) {
                                                ourLog.error("Failed to initialize FhirContext", e);
                                                throw e;
                                        } finally {
                                                myInitializing = false;
                                        }
                                }
                        }
                }
        }

        @Override
        public String toString() {
                return "FhirContext[" + myVersion.getVersion().name() + "]";
        }

        // TODO KHS add the other primitive types
        @Deprecated(since = "6.6.0", forRemoval = true)
        public IPrimitiveType<Boolean> getPrimitiveBoolean(Boolean theValue) {
                return newPrimitiveBoolean(theValue);
        }

        public IPrimitiveType<Boolean> newPrimitiveBoolean(Boolean theValue) {
                IPrimitiveType<Boolean> retval =
                                (IPrimitiveType<Boolean>) getElementDefinition("boolean").newInstance();
                retval.setValue(theValue);
                return retval;
        }

        public IPrimitiveType<String> newPrimitiveString(String theValue) {
                IPrimitiveType<String> retval =
                                (IPrimitiveType<String>) getElementDefinition("string").newInstance();
                retval.setValue(theValue);
                return retval;
        }

        private static boolean tryToInitParser(Runnable run) {
                boolean retVal;
                try {
                        run.run();
                        retVal = true;
                } catch (UnsupportedClassVersionError | Exception | NoClassDefFoundError e) {
                        retVal = false;
                }
                return retVal;
        }

        /**
         * Creates and returns a new FhirContext with version {@link FhirVersionEnum#DSTU2 DSTU2}
         */
        public static FhirContext forDstu2() {
                return new FhirContext(FhirVersionEnum.DSTU2);
        }

        /**
         * Creates and returns a new FhirContext with version {@link FhirVersionEnum#DSTU2_HL7ORG DSTU2} (using the Reference
         * Implementation Structures)
         */
        public static FhirContext forDstu2Hl7Org() {
                return new FhirContext(FhirVersionEnum.DSTU2_HL7ORG);
        }

        /**
         * Creates and returns a new FhirContext with version {@link FhirVersionEnum#DSTU2 DSTU2} (2016 May DSTU3 Snapshot)
         */
        public static FhirContext forDstu2_1() {
                return new FhirContext(FhirVersionEnum.DSTU2_1);
        }

        /**
         * Creates and returns a new FhirContext with version {@link FhirVersionEnum#DSTU3 DSTU3}
         *
         * @since 1.4
         */
        public static FhirContext forDstu3() {
                return new FhirContext(FhirVersionEnum.DSTU3);
        }

        /**
         * Creates and returns a new FhirContext with version {@link FhirVersionEnum#R4 R4}
         *
         * @since 3.0.0
         */
        public static FhirContext forR4() {
                return new FhirContext(FhirVersionEnum.R4);
        }

        /**
         * Creates and returns a new FhirContext with version {@link FhirVersionEnum#R4B R4B}
         *
         * @since 6.2.0
         */
        public static FhirContext forR4B() {
                return new FhirContext(FhirVersionEnum.R4B);
        }

        /**
         * Creates and returns a new FhirContext with version {@link FhirVersionEnum#R5 R5}
         *
         * @since 4.0.0
         */
        public static FhirContext forR5() {
                return new FhirContext(FhirVersionEnum.R5);
        }

        /**
         * Returns a statically cached {@literal FhirContext} instance for the given version, creating one if none exists in the
         * cache. One FhirContext will be kept in the cache for each FHIR version that is requested (by calling
         * this method for that version), and the cache will never be expired.
         *
         * @since 5.1.0
         */
        public static FhirContext forCached(FhirVersionEnum theFhirVersionEnum) {
                return ourStaticContexts.computeIfAbsent(theFhirVersionEnum, v -> new FhirContext(v));
        }

        private static Collection<Class<? extends IBaseResource>> toCollection(
                        Class<? extends IBaseResource> theResourceType) {
                ArrayList<Class<? extends IBaseResource>> retVal = new ArrayList<>(1);
                retVal.add(theResourceType);
                return retVal;
        }

        @SuppressWarnings("unchecked")
        private static List<Class<? extends IBaseResource>> toCollection(final Class<?>[] theResourceTypes) {
                ArrayList<Class<? extends IBaseResource>> retVal = new ArrayList<Class<? extends IBaseResource>>(1);
                for (Class<?> clazz : theResourceTypes) {
                        if (!IResource.class.isAssignableFrom(clazz)) {
                                throw new IllegalArgumentException(Msg.code(1688) + clazz.getCanonicalName() + " is not an instance of "
                                                + IResource.class.getSimpleName());
                        }
                        retVal.add((Class<? extends IResource>) clazz);
                }
                return retVal;
        }
}