001
002package ca.uhn.fhir.jpa.rp.dstu2;
003
004import java.util.*;
005
006import org.apache.commons.lang3.StringUtils;
007
008import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
009import ca.uhn.fhir.model.api.Include;
010import ca.uhn.fhir.model.api.annotation.*;
011import ca.uhn.fhir.model.dstu2.composite.*;
012import ca.uhn.fhir.model.dstu2.resource.*; //
013import ca.uhn.fhir.rest.annotation.*;
014import ca.uhn.fhir.rest.param.*;
015import ca.uhn.fhir.rest.api.SortSpec;
016import ca.uhn.fhir.rest.api.SummaryEnum;
017import ca.uhn.fhir.rest.api.SearchTotalModeEnum;
018import ca.uhn.fhir.rest.api.SearchContainedModeEnum;
019
020public class SpecimenResourceProvider extends 
021        ca.uhn.fhir.jpa.provider.BaseJpaResourceProvider<Specimen>
022        {
023
024        @Override
025        public Class<Specimen> getResourceType() {
026                return Specimen.class;
027        }
028
029        @Search(allowUnknownParams=true)
030        public ca.uhn.fhir.rest.api.server.IBundleProvider search(
031                        jakarta.servlet.http.HttpServletRequest theServletRequest,
032                        jakarta.servlet.http.HttpServletResponse theServletResponse,
033
034                        ca.uhn.fhir.rest.api.server.RequestDetails theRequestDetails,
035
036                        @Description(shortDefinition="Search the contents of the resource's data using a filter")
037                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_FILTER)
038                        StringAndListParam theFtFilter,
039
040                        @Description(shortDefinition="Search the contents of the resource's data using a fulltext search")
041                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_CONTENT)
042                        StringAndListParam theFtContent, 
043
044                        @Description(shortDefinition="Search the contents of the resource's narrative using a fulltext search")
045                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_TEXT)
046                        StringAndListParam theFtText, 
047
048                        @Description(shortDefinition="Search for resources which have the given tag")
049                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_TAG)
050                        TokenAndListParam theSearchForTag, 
051
052                        @Description(shortDefinition="Search for resources which have the given security labels")
053                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_SECURITY)
054                        TokenAndListParam theSearchForSecurity, 
055  
056                        @Description(shortDefinition="Search for resources which have the given profile")
057                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_PROFILE)
058                        UriAndListParam theSearchForProfile,
059
060                        @Description(shortDefinition="Search the contents of the resource's data using a list")
061                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_LIST)
062                        StringAndListParam theList,
063
064                        @Description(shortDefinition="The language of the resource")
065                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_LANGUAGE)
066                        TokenAndListParam theResourceLanguage,
067
068                        @Description(shortDefinition="Search for resources which have the given source value (Resource.meta.source)")
069                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_SOURCE)
070                        UriAndListParam theSearchForSource,
071
072                        @Description(shortDefinition="Return resources linked to by the given target")
073                        @OptionalParam(name="_has")
074                        HasAndListParam theHas, 
075
076   
077
078                        @Description(shortDefinition="The ID of the resource")
079                        @OptionalParam(name="_id")
080                        StringAndListParam the_id, 
081   
082
083                        @Description(shortDefinition="The accession number associated with the specimen")
084                        @OptionalParam(name="accession")
085                        TokenAndListParam theAccession,
086   
087
088                        @Description(shortDefinition="The code for the body site from where the specimen originated")
089                        @OptionalParam(name="bodysite")
090                        TokenAndListParam theBodysite,
091   
092
093                        @Description(shortDefinition="The date the specimen was collected")
094                        @OptionalParam(name="collected")
095                        DateRangeParam theCollected, 
096   
097
098                        @Description(shortDefinition="Who collected the specimen")
099                        @OptionalParam(name="collector", targetTypes={  } )
100                        ReferenceAndListParam theCollector, 
101   
102
103                        @Description(shortDefinition="The kind of specimen container")
104                        @OptionalParam(name="container")
105                        TokenAndListParam theContainer,
106   
107
108                        @Description(shortDefinition="The unique identifier associated with the specimen container")
109                        @OptionalParam(name="container-id")
110                        TokenAndListParam theContainer_id,
111   
112
113                        @Description(shortDefinition="The unique identifier associated with the specimen")
114                        @OptionalParam(name="identifier")
115                        TokenAndListParam theIdentifier,
116   
117
118                        @Description(shortDefinition="The parent of the specimen")
119                        @OptionalParam(name="parent", targetTypes={  } )
120                        ReferenceAndListParam theParent, 
121   
122
123                        @Description(shortDefinition="The patient the specimen comes from")
124                        @OptionalParam(name="patient", targetTypes={  } )
125                        ReferenceAndListParam thePatient, 
126   
127
128                        @Description(shortDefinition="The subject of the specimen")
129                        @OptionalParam(name="subject", targetTypes={  } )
130                        ReferenceAndListParam theSubject, 
131   
132
133                        @Description(shortDefinition="The specimen type")
134                        @OptionalParam(name="type")
135                        TokenAndListParam theType,
136
137                        @RawParam
138                        Map<String, List<String>> theAdditionalRawParams,
139
140                                @Description(shortDefinition="Only return resources which were last updated as specified by the given range")
141                        @OptionalParam(name="_lastUpdated")
142                        DateRangeParam the_lastUpdated,
143
144                        @IncludeParam
145                        Set<Include> theIncludes,
146
147                        @IncludeParam(reverse=true)
148                        Set<Include> theRevIncludes,
149
150                        @Sort
151                        SortSpec theSort,
152                        
153                        @ca.uhn.fhir.rest.annotation.Count
154                        Integer theCount,
155
156                        @ca.uhn.fhir.rest.annotation.Offset
157                        Integer theOffset,
158
159                        SummaryEnum theSummaryMode,
160
161                        SearchTotalModeEnum theSearchTotalMode,
162
163                        SearchContainedModeEnum theSearchContainedMode
164
165                        ) {
166                startRequest(theServletRequest);
167                try {
168                        SearchParameterMap paramMap = new SearchParameterMap();
169                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_FILTER, theFtFilter);
170                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_CONTENT, theFtContent);
171                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_TEXT, theFtText);
172                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_TAG, theSearchForTag);
173                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_SECURITY, theSearchForSecurity);
174                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_PROFILE, theSearchForProfile);
175                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_SOURCE, theSearchForSource);
176                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_LIST, theList);
177                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_LANGUAGE, theResourceLanguage);
178
179                        paramMap.add("_has", theHas);
180                                paramMap.add("_id", the_id);
181                                paramMap.add("accession", theAccession);
182                                paramMap.add("bodysite", theBodysite);
183                                paramMap.add("collected", theCollected);
184                                paramMap.add("collector", theCollector);
185                                paramMap.add("container", theContainer);
186                                paramMap.add("container-id", theContainer_id);
187                                paramMap.add("identifier", theIdentifier);
188                                paramMap.add("parent", theParent);
189                                paramMap.add("patient", thePatient);
190                                paramMap.add("subject", theSubject);
191                                paramMap.add("type", theType);
192paramMap.setRevIncludes(theRevIncludes);
193                        paramMap.setLastUpdated(the_lastUpdated);
194                        paramMap.setIncludes(theIncludes);
195                        paramMap.setSort(theSort);
196                        paramMap.setCount(theCount);
197                        paramMap.setOffset(theOffset);
198                        paramMap.setSummaryMode(theSummaryMode);
199                        paramMap.setSearchTotalMode(theSearchTotalMode);
200                        paramMap.setSearchContainedMode(theSearchContainedMode);
201
202                        getDao().translateRawParameters(theAdditionalRawParams, paramMap);
203
204                        ca.uhn.fhir.rest.api.server.IBundleProvider retVal = getDao().search(paramMap, theRequestDetails, theServletResponse);
205                        return retVal;
206                } finally {
207                        endRequest(theServletRequest);
208                }
209        }
210
211}