001
002package ca.uhn.fhir.jpa.rp.r4;
003
004import java.util.*;
005
006import org.apache.commons.lang3.StringUtils;
007
008import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
009import ca.uhn.fhir.model.api.Include;
010import ca.uhn.fhir.model.api.annotation.*;
011import org.hl7.fhir.r4.model.*;
012import ca.uhn.fhir.rest.annotation.*;
013import ca.uhn.fhir.rest.param.*;
014import ca.uhn.fhir.rest.api.SortSpec;
015import ca.uhn.fhir.rest.api.SummaryEnum;
016import ca.uhn.fhir.rest.api.SearchTotalModeEnum;
017import ca.uhn.fhir.rest.api.SearchContainedModeEnum;
018
019public class SpecimenResourceProvider extends 
020        ca.uhn.fhir.jpa.provider.BaseJpaResourceProvider<Specimen>
021        {
022
023        @Override
024        public Class<Specimen> getResourceType() {
025                return Specimen.class;
026        }
027
028        @Search(allowUnknownParams=true)
029        public ca.uhn.fhir.rest.api.server.IBundleProvider search(
030                        jakarta.servlet.http.HttpServletRequest theServletRequest,
031                        jakarta.servlet.http.HttpServletResponse theServletResponse,
032
033                        ca.uhn.fhir.rest.api.server.RequestDetails theRequestDetails,
034
035                        @Description(shortDefinition="Search the contents of the resource's data using a filter")
036                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_FILTER)
037                        StringAndListParam theFtFilter,
038
039                        @Description(shortDefinition="Search the contents of the resource's data using a fulltext search")
040                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_CONTENT)
041                        StringAndListParam theFtContent, 
042
043                        @Description(shortDefinition="Search the contents of the resource's narrative using a fulltext search")
044                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_TEXT)
045                        StringAndListParam theFtText, 
046
047                        @Description(shortDefinition="Search for resources which have the given tag")
048                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_TAG)
049                        TokenAndListParam theSearchForTag, 
050
051                        @Description(shortDefinition="Search for resources which have the given security labels")
052                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_SECURITY)
053                        TokenAndListParam theSearchForSecurity, 
054  
055                        @Description(shortDefinition="Search for resources which have the given profile")
056                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_PROFILE)
057                        UriAndListParam theSearchForProfile,
058
059                        @Description(shortDefinition="Search the contents of the resource's data using a list")
060                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_LIST)
061                        StringAndListParam theList,
062
063
064                        @Description(shortDefinition="Search for resources which have the given source value (Resource.meta.source)")
065                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_SOURCE)
066                        UriAndListParam theSearchForSource,
067
068                        @Description(shortDefinition="Return resources linked to by the given target")
069                        @OptionalParam(name="_has")
070                        HasAndListParam theHas, 
071
072   
073
074                        @Description(shortDefinition="The ID of the resource")
075                        @OptionalParam(name="_id")
076                        TokenAndListParam the_id,
077   
078
079                        @Description(shortDefinition="The accession number associated with the specimen")
080                        @OptionalParam(name="accession")
081                        TokenAndListParam theAccession,
082   
083
084                        @Description(shortDefinition="The code for the body site from where the specimen originated")
085                        @OptionalParam(name="bodysite")
086                        TokenAndListParam theBodysite,
087   
088
089                        @Description(shortDefinition="The date the specimen was collected")
090                        @OptionalParam(name="collected")
091                        DateRangeParam theCollected, 
092   
093
094                        @Description(shortDefinition="Who collected the specimen")
095                        @OptionalParam(name="collector", targetTypes={  } )
096                        ReferenceAndListParam theCollector, 
097   
098
099                        @Description(shortDefinition="The kind of specimen container")
100                        @OptionalParam(name="container")
101                        TokenAndListParam theContainer,
102   
103
104                        @Description(shortDefinition="The unique identifier associated with the specimen container")
105                        @OptionalParam(name="container-id")
106                        TokenAndListParam theContainer_id,
107   
108
109                        @Description(shortDefinition="The unique identifier associated with the specimen")
110                        @OptionalParam(name="identifier")
111                        TokenAndListParam theIdentifier,
112   
113
114                        @Description(shortDefinition="The parent of the specimen")
115                        @OptionalParam(name="parent", targetTypes={  } )
116                        ReferenceAndListParam theParent, 
117   
118
119                        @Description(shortDefinition="The patient the specimen comes from")
120                        @OptionalParam(name="patient", targetTypes={  } )
121                        ReferenceAndListParam thePatient, 
122   
123
124                        @Description(shortDefinition="available | unavailable | unsatisfactory | entered-in-error")
125                        @OptionalParam(name="status")
126                        TokenAndListParam theStatus,
127   
128
129                        @Description(shortDefinition="The subject of the specimen")
130                        @OptionalParam(name="subject", targetTypes={  } )
131                        ReferenceAndListParam theSubject, 
132   
133
134                        @Description(shortDefinition="The specimen type")
135                        @OptionalParam(name="type")
136                        TokenAndListParam theType,
137
138                        @RawParam
139                        Map<String, List<String>> theAdditionalRawParams,
140
141                        @Description(shortDefinition="Only return resources which were last updated as specified by the given range")
142                        @OptionalParam(name="_lastUpdated")
143                        DateRangeParam theLastUpdated, 
144
145                        @IncludeParam
146                        Set<Include> theIncludes,
147
148                        @IncludeParam(reverse=true)
149                        Set<Include> theRevIncludes,
150
151                        @Sort
152                        SortSpec theSort,
153                        
154                        @ca.uhn.fhir.rest.annotation.Count
155                        Integer theCount,
156
157                        @ca.uhn.fhir.rest.annotation.Offset
158                        Integer theOffset,
159
160                        SummaryEnum theSummaryMode,
161
162                        SearchTotalModeEnum theSearchTotalMode,
163
164                        SearchContainedModeEnum theSearchContainedMode
165
166                        ) {
167                startRequest(theServletRequest);
168                try {
169                        SearchParameterMap paramMap = new SearchParameterMap();
170                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_FILTER, theFtFilter);
171                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_CONTENT, theFtContent);
172                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_TEXT, theFtText);
173                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_TAG, theSearchForTag);
174                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_SECURITY, theSearchForSecurity);
175                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_PROFILE, theSearchForProfile);
176                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_SOURCE, theSearchForSource);
177                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_LIST, theList);
178                        paramMap.add("_has", theHas);
179                        paramMap.add("_id", the_id);
180                        paramMap.add("accession", theAccession);
181                        paramMap.add("bodysite", theBodysite);
182                        paramMap.add("collected", theCollected);
183                        paramMap.add("collector", theCollector);
184                        paramMap.add("container", theContainer);
185                        paramMap.add("container-id", theContainer_id);
186                        paramMap.add("identifier", theIdentifier);
187                        paramMap.add("parent", theParent);
188                        paramMap.add("patient", thePatient);
189                        paramMap.add("status", theStatus);
190                        paramMap.add("subject", theSubject);
191                        paramMap.add("type", theType);
192                        paramMap.setRevIncludes(theRevIncludes);
193                        paramMap.setLastUpdated(theLastUpdated);
194                        paramMap.setIncludes(theIncludes);
195                        paramMap.setSort(theSort);
196                        paramMap.setCount(theCount);
197                        paramMap.setOffset(theOffset);
198                        paramMap.setSummaryMode(theSummaryMode);
199                        paramMap.setSearchTotalMode(theSearchTotalMode);
200                        paramMap.setSearchContainedMode(theSearchContainedMode);
201
202                        getDao().translateRawParameters(theAdditionalRawParams, paramMap);
203
204                        ca.uhn.fhir.rest.api.server.IBundleProvider retVal = getDao().search(paramMap, theRequestDetails, theServletResponse);
205                        return retVal;
206                } finally {
207                        endRequest(theServletRequest);
208                }
209        }
210
211}