001
002package ca.uhn.fhir.jpa.rp.r5;
003
004import java.util.*;
005
006import org.apache.commons.lang3.StringUtils;
007
008import ca.uhn.fhir.jpa.provider.r5.*;
009import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
010import ca.uhn.fhir.model.api.Include;
011import ca.uhn.fhir.model.api.annotation.*;
012import org.hl7.fhir.r5.model.*;
013import ca.uhn.fhir.rest.annotation.*;
014import ca.uhn.fhir.rest.param.*;
015import ca.uhn.fhir.rest.api.SortSpec;
016import ca.uhn.fhir.rest.api.SummaryEnum;
017import ca.uhn.fhir.rest.api.SearchTotalModeEnum;
018import ca.uhn.fhir.rest.api.SearchContainedModeEnum;
019
020public class SpecimenResourceProvider extends 
021        JpaResourceProviderR5<Specimen>
022        {
023
024        @Override
025        public Class<Specimen> getResourceType() {
026                return Specimen.class;
027        }
028
029        @Search(allowUnknownParams=true)
030        public ca.uhn.fhir.rest.api.server.IBundleProvider search(
031                        javax.servlet.http.HttpServletRequest theServletRequest,
032                        javax.servlet.http.HttpServletResponse theServletResponse,
033
034                        ca.uhn.fhir.rest.api.server.RequestDetails theRequestDetails,
035
036                        @Description(shortDefinition="Search the contents of the resource's data using a filter")
037                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_FILTER)
038                        StringAndListParam theFtFilter,
039
040                        @Description(shortDefinition="Search the contents of the resource's data using a fulltext search")
041                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_CONTENT)
042                        StringAndListParam theFtContent, 
043
044                        @Description(shortDefinition="Search the contents of the resource's narrative using a fulltext search")
045                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_TEXT)
046                        StringAndListParam theFtText, 
047
048                        @Description(shortDefinition="Search for resources which have the given tag")
049                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_TAG)
050                        TokenAndListParam theSearchForTag, 
051
052                        @Description(shortDefinition="Search for resources which have the given security labels")
053                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_SECURITY)
054                        TokenAndListParam theSearchForSecurity, 
055  
056                        @Description(shortDefinition="Search for resources which have the given profile")
057                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_PROFILE)
058                        UriAndListParam theSearchForProfile,
059
060                        @Description(shortDefinition="Search for resources which have the given source value (Resource.meta.source)")
061                        @OptionalParam(name=ca.uhn.fhir.rest.api.Constants.PARAM_SOURCE)
062                        UriAndListParam theSearchForSource,
063
064                        @Description(shortDefinition="Return resources linked to by the given target")
065                        @OptionalParam(name="_has")
066                        HasAndListParam theHas, 
067
068   
069
070                        @Description(shortDefinition="The ID of the resource")
071                        @OptionalParam(name="_id")
072                        TokenAndListParam the_id,
073   
074
075                        @Description(shortDefinition="Search on the narrative of the resource")
076                        @OptionalParam(name="_text")
077                        SpecialAndListParam the_text,
078   
079
080                        @Description(shortDefinition="The accession number associated with the specimen")
081                        @OptionalParam(name="accession")
082                        TokenAndListParam theAccession,
083   
084
085                        @Description(shortDefinition="The code for the body site from where the specimen originated")
086                        @OptionalParam(name="bodysite")
087                        TokenAndListParam theBodysite,
088   
089
090                        @Description(shortDefinition="The date the specimen was collected")
091                        @OptionalParam(name="collected")
092                        DateRangeParam theCollected, 
093   
094
095                        @Description(shortDefinition="Who collected the specimen")
096                        @OptionalParam(name="collector", targetTypes={  } )
097                        ReferenceAndListParam theCollector, 
098   
099
100                        @Description(shortDefinition="The kind of specimen container")
101                        @OptionalParam(name="container")
102                        TokenAndListParam theContainer,
103   
104
105                        @Description(shortDefinition="The unique identifier associated with the specimen container")
106                        @OptionalParam(name="container-id")
107                        TokenAndListParam theContainer_id,
108   
109
110                        @Description(shortDefinition="The unique identifier associated with the specimen")
111                        @OptionalParam(name="identifier")
112                        TokenAndListParam theIdentifier,
113   
114
115                        @Description(shortDefinition="The parent of the specimen")
116                        @OptionalParam(name="parent", targetTypes={  } )
117                        ReferenceAndListParam theParent, 
118   
119
120                        @Description(shortDefinition="The patient the specimen comes from")
121                        @OptionalParam(name="patient", targetTypes={  } )
122                        ReferenceAndListParam thePatient, 
123   
124
125                        @Description(shortDefinition="available | unavailable | unsatisfactory | entered-in-error")
126                        @OptionalParam(name="status")
127                        TokenAndListParam theStatus,
128   
129
130                        @Description(shortDefinition="The subject of the specimen")
131                        @OptionalParam(name="subject", targetTypes={  } )
132                        ReferenceAndListParam theSubject, 
133   
134
135                        @Description(shortDefinition="The specimen type")
136                        @OptionalParam(name="type")
137                        TokenAndListParam theType,
138
139                        @RawParam
140                        Map<String, List<String>> theAdditionalRawParams,
141
142                        @Description(shortDefinition="Only return resources which were last updated as specified by the given range")
143                        @OptionalParam(name="_lastUpdated")
144                        DateRangeParam theLastUpdated, 
145
146                        @IncludeParam
147                        Set<Include> theIncludes,
148
149                        @IncludeParam(reverse=true)
150                        Set<Include> theRevIncludes,
151
152                        @Sort
153                        SortSpec theSort,
154                        
155                        @ca.uhn.fhir.rest.annotation.Count
156                        Integer theCount,
157
158                        @ca.uhn.fhir.rest.annotation.Offset
159                        Integer theOffset,
160
161                        SummaryEnum theSummaryMode,
162
163                        SearchTotalModeEnum theSearchTotalMode,
164
165                        SearchContainedModeEnum theSearchContainedMode
166
167                        ) {
168                startRequest(theServletRequest);
169                try {
170                        SearchParameterMap paramMap = new SearchParameterMap();
171                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_FILTER, theFtFilter);
172                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_CONTENT, theFtContent);
173                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_TEXT, theFtText);
174                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_TAG, theSearchForTag);
175                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_SECURITY, theSearchForSecurity);
176                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_PROFILE, theSearchForProfile);
177                        paramMap.add(ca.uhn.fhir.rest.api.Constants.PARAM_SOURCE, theSearchForSource);
178                        paramMap.add("_has", theHas);
179                        paramMap.add("_id", the_id);
180                        paramMap.add("_text", the_text);
181                        paramMap.add("accession", theAccession);
182                        paramMap.add("bodysite", theBodysite);
183                        paramMap.add("collected", theCollected);
184                        paramMap.add("collector", theCollector);
185                        paramMap.add("container", theContainer);
186                        paramMap.add("container-id", theContainer_id);
187                        paramMap.add("identifier", theIdentifier);
188                        paramMap.add("parent", theParent);
189                        paramMap.add("patient", thePatient);
190                        paramMap.add("status", theStatus);
191                        paramMap.add("subject", theSubject);
192                        paramMap.add("type", theType);
193                        paramMap.setRevIncludes(theRevIncludes);
194                        paramMap.setLastUpdated(theLastUpdated);
195                        paramMap.setIncludes(theIncludes);
196                        paramMap.setSort(theSort);
197                        paramMap.setCount(theCount);
198                        paramMap.setOffset(theOffset);
199                        paramMap.setSummaryMode(theSummaryMode);
200                        paramMap.setSearchTotalMode(theSearchTotalMode);
201                        paramMap.setSearchContainedMode(theSearchContainedMode);
202
203                        getDao().translateRawParameters(theAdditionalRawParams, paramMap);
204
205                        ca.uhn.fhir.rest.api.server.IBundleProvider retVal = getDao().search(paramMap, theRequestDetails, theServletResponse);
206                        return retVal;
207                } finally {
208                        endRequest(theServletRequest);
209                }
210        }
211
212}