
001package ca.uhn.fhir.jpa.term.loinc; 002 003/*- 004 * #%L 005 * HAPI FHIR JPA Server 006 * %% 007 * Copyright (C) 2014 - 2022 Smile CDR, Inc. 008 * %% 009 * Licensed under the Apache License, Version 2.0 (the "License"); 010 * you may not use this file except in compliance with the License. 011 * You may obtain a copy of the License at 012 * 013 * http://www.apache.org/licenses/LICENSE-2.0 014 * 015 * Unless required by applicable law or agreed to in writing, software 016 * distributed under the License is distributed on an "AS IS" BASIS, 017 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 018 * See the License for the specific language governing permissions and 019 * limitations under the License. 020 * #L% 021 */ 022 023import ca.uhn.fhir.jpa.entity.TermConcept; 024import ca.uhn.fhir.jpa.term.api.ITermLoaderSvc; 025import ca.uhn.fhir.jpa.term.IZipContentsHandlerCsv; 026import org.apache.commons.csv.CSVRecord; 027import org.hl7.fhir.r4.model.ConceptMap; 028import org.hl7.fhir.r4.model.Enumerations; 029import org.hl7.fhir.r4.model.ValueSet; 030 031import java.util.List; 032import java.util.Map; 033import java.util.Properties; 034 035import static ca.uhn.fhir.jpa.term.loinc.LoincUploadPropertiesEnum.LOINC_CODESYSTEM_VERSION; 036import static ca.uhn.fhir.jpa.term.loinc.LoincUploadPropertiesEnum.LOINC_CONCEPTMAP_VERSION; 037import static org.apache.commons.lang3.StringUtils.trim; 038 039public class LoincIeeeMedicalDeviceCodeHandler extends BaseLoincHandler implements IZipContentsHandlerCsv { 040 041 public static final String LOINC_IEEE_CM_ID = "loinc-to-ieee-11073-10101"; 042 public static final String LOINC_IEEE_CM_URI = "http://loinc.org/cm/loinc-to-ieee-11073-10101"; 043 public static final String LOINC_IEEE_CM_NAME = "LOINC/IEEE Device Code Mappings"; 044 private static final String CM_COPYRIGHT = "The LOINC/IEEE Medical Device Code Mapping Table contains content from IEEE (http://ieee.org), copyright © 2017 IEEE."; 045 046 /** 047 * Constructor 048 */ 049 public LoincIeeeMedicalDeviceCodeHandler(Map<String, TermConcept> theCode2concept, List<ValueSet> theValueSets, 050 List<ConceptMap> theConceptMaps, Properties theUploadProperties, String theCopyrightStatement) { 051 super(theCode2concept, theValueSets, theConceptMaps, theUploadProperties, theCopyrightStatement); 052 } 053 054 @Override 055 public void accept(CSVRecord theRecord) { 056 057 String codeSystemVersionId = myUploadProperties.getProperty(LOINC_CODESYSTEM_VERSION.getCode()); 058 String loincIeeeCmVersion; 059 if (codeSystemVersionId != null) { 060 loincIeeeCmVersion = myUploadProperties.getProperty(LOINC_CONCEPTMAP_VERSION.getCode()) + "-" + codeSystemVersionId; 061 } else { 062 loincIeeeCmVersion = myUploadProperties.getProperty(LOINC_CONCEPTMAP_VERSION.getCode()); 063 } 064 String loincNumber = trim(theRecord.get("LOINC_NUM")); 065 String longCommonName = trim(theRecord.get("LOINC_LONG_COMMON_NAME")); 066 String ieeeCode = trim(theRecord.get("IEEE_CF_CODE10")); 067 String ieeeDisplayName = trim(theRecord.get("IEEE_REFID")); 068 069 // LOINC Part -> IEEE 11073:10101 Mappings 070 String sourceCodeSystemUri = ITermLoaderSvc.LOINC_URI; 071 String targetCodeSystemUri = ITermLoaderSvc.IEEE_11073_10101_URI; 072 String conceptMapId; 073 if (codeSystemVersionId != null) { 074 conceptMapId = LOINC_IEEE_CM_ID + "-" + codeSystemVersionId; 075 } else { 076 conceptMapId = LOINC_IEEE_CM_ID; 077 } 078 addConceptMapEntry( 079 new ConceptMapping() 080 .setConceptMapId(conceptMapId) 081 .setConceptMapUri(LOINC_IEEE_CM_URI) 082 .setConceptMapVersion(loincIeeeCmVersion) 083 .setConceptMapName(LOINC_IEEE_CM_NAME) 084 .setSourceCodeSystem(sourceCodeSystemUri) 085 .setSourceCodeSystemVersion(codeSystemVersionId) 086 .setSourceCode(loincNumber) 087 .setSourceDisplay(longCommonName) 088 .setTargetCodeSystem(targetCodeSystemUri) 089 .setTargetCode(ieeeCode) 090 .setTargetDisplay(ieeeDisplayName) 091 .setEquivalence(Enumerations.ConceptMapEquivalence.EQUAL), 092 myLoincCopyrightStatement + " " + CM_COPYRIGHT); 093 } 094 095 096}