001/*-
002 * #%L
003 * HAPI FHIR JPA Server
004 * %%
005 * Copyright (C) 2014 - 2025 Smile CDR, Inc.
006 * %%
007 * Licensed under the Apache License, Version 2.0 (the "License");
008 * you may not use this file except in compliance with the License.
009 * You may obtain a copy of the License at
010 *
011 *      http://www.apache.org/licenses/LICENSE-2.0
012 *
013 * Unless required by applicable law or agreed to in writing, software
014 * distributed under the License is distributed on an "AS IS" BASIS,
015 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
016 * See the License for the specific language governing permissions and
017 * limitations under the License.
018 * #L%
019 */
020package ca.uhn.fhir.jpa.term.loinc;
021
022import ca.uhn.fhir.jpa.entity.TermConcept;
023import ca.uhn.fhir.jpa.term.IZipContentsHandlerCsv;
024import ca.uhn.fhir.jpa.term.api.ITermLoaderSvc;
025import org.apache.commons.csv.CSVRecord;
026import org.hl7.fhir.r4.model.ConceptMap;
027import org.hl7.fhir.r4.model.Enumerations;
028import org.hl7.fhir.r4.model.ValueSet;
029
030import java.util.List;
031import java.util.Map;
032import java.util.Properties;
033
034import static ca.uhn.fhir.jpa.term.loinc.LoincUploadPropertiesEnum.LOINC_CODESYSTEM_VERSION;
035import static ca.uhn.fhir.jpa.term.loinc.LoincUploadPropertiesEnum.LOINC_CONCEPTMAP_VERSION;
036import static org.apache.commons.lang3.StringUtils.trim;
037
038public class LoincIeeeMedicalDeviceCodeHandler extends BaseLoincHandler implements IZipContentsHandlerCsv {
039
040        public static final String LOINC_IEEE_CM_ID = "loinc-to-ieee-11073-10101";
041        public static final String LOINC_IEEE_CM_URI = "http://loinc.org/cm/loinc-to-ieee-11073-10101";
042        public static final String LOINC_IEEE_CM_NAME = "LOINC/IEEE Device Code Mappings";
043        private static final String CM_COPYRIGHT =
044                        "The LOINC/IEEE Medical Device Code Mapping Table contains content from IEEE (http://ieee.org), copyright © 2017 IEEE.";
045
046        /**
047         * Constructor
048         */
049        public LoincIeeeMedicalDeviceCodeHandler(
050                        Map<String, TermConcept> theCode2concept,
051                        List<ValueSet> theValueSets,
052                        List<ConceptMap> theConceptMaps,
053                        Properties theUploadProperties,
054                        String theCopyrightStatement) {
055                super(theCode2concept, theValueSets, theConceptMaps, theUploadProperties, theCopyrightStatement);
056        }
057
058        @Override
059        public void accept(CSVRecord theRecord) {
060
061                String codeSystemVersionId = myUploadProperties.getProperty(LOINC_CODESYSTEM_VERSION.getCode());
062                String loincIeeeCmVersion;
063                if (codeSystemVersionId != null) {
064                        loincIeeeCmVersion =
065                                        myUploadProperties.getProperty(LOINC_CONCEPTMAP_VERSION.getCode()) + "-" + codeSystemVersionId;
066                } else {
067                        loincIeeeCmVersion = myUploadProperties.getProperty(LOINC_CONCEPTMAP_VERSION.getCode());
068                }
069                String loincNumber = trim(theRecord.get("LOINC_NUM"));
070                String longCommonName = trim(theRecord.get("LOINC_LONG_COMMON_NAME"));
071                String ieeeCode = trim(theRecord.get("IEEE_CF_CODE10"));
072                String ieeeDisplayName = trim(theRecord.get("IEEE_REFID"));
073
074                // LOINC Part -> IEEE 11073:10101 Mappings
075                String sourceCodeSystemUri = ITermLoaderSvc.LOINC_URI;
076                String targetCodeSystemUri = ITermLoaderSvc.IEEE_11073_10101_URI;
077                String conceptMapId;
078                if (codeSystemVersionId != null) {
079                        conceptMapId = LOINC_IEEE_CM_ID + "-" + codeSystemVersionId;
080                } else {
081                        conceptMapId = LOINC_IEEE_CM_ID;
082                }
083                addConceptMapEntry(
084                                new ConceptMapping()
085                                                .setConceptMapId(conceptMapId)
086                                                .setConceptMapUri(LOINC_IEEE_CM_URI)
087                                                .setConceptMapVersion(loincIeeeCmVersion)
088                                                .setConceptMapName(LOINC_IEEE_CM_NAME)
089                                                .setSourceCodeSystem(sourceCodeSystemUri)
090                                                .setSourceCodeSystemVersion(codeSystemVersionId)
091                                                .setSourceCode(loincNumber)
092                                                .setSourceDisplay(longCommonName)
093                                                .setTargetCodeSystem(targetCodeSystemUri)
094                                                .setTargetCode(ieeeCode)
095                                                .setTargetDisplay(ieeeDisplayName)
096                                                .setEquivalence(Enumerations.ConceptMapEquivalence.EQUAL),
097                                myLoincCopyrightStatement + " " + CM_COPYRIGHT);
098        }
099}