001/*-
002 * #%L
003 * HAPI FHIR JPA Server
004 * %%
005 * Copyright (C) 2014 - 2024 Smile CDR, Inc.
006 * %%
007 * Licensed under the Apache License, Version 2.0 (the "License");
008 * you may not use this file except in compliance with the License.
009 * You may obtain a copy of the License at
010 *
011 *      http://www.apache.org/licenses/LICENSE-2.0
012 *
013 * Unless required by applicable law or agreed to in writing, software
014 * distributed under the License is distributed on an "AS IS" BASIS,
015 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
016 * See the License for the specific language governing permissions and
017 * limitations under the License.
018 * #L%
019 */
020package ca.uhn.fhir.jpa.term.loinc;
021
022import ca.uhn.fhir.jpa.entity.TermConcept;
023import ca.uhn.fhir.jpa.term.IZipContentsHandlerCsv;
024import org.apache.commons.csv.CSVRecord;
025import org.hl7.fhir.r4.model.ConceptMap;
026import org.hl7.fhir.r4.model.ValueSet;
027
028import java.util.List;
029import java.util.Map;
030import java.util.Properties;
031
032import static ca.uhn.fhir.jpa.term.loinc.LoincUploadPropertiesEnum.LOINC_CODESYSTEM_VERSION;
033import static org.apache.commons.lang3.StringUtils.trim;
034
035public class LoincParentGroupFileHandler extends BaseLoincHandler implements IZipContentsHandlerCsv {
036
037        public LoincParentGroupFileHandler(
038                        Map<String, TermConcept> theCode2concept,
039                        List<ValueSet> theValueSets,
040                        List<ConceptMap> theConceptMaps,
041                        Properties theUploadProperties) {
042                super(theCode2concept, theValueSets, theConceptMaps, theUploadProperties);
043        }
044
045        @Override
046        public void accept(CSVRecord theRecord) {
047                // "ParentGroupId","ParentGroup","Status"
048                String parentGroupId = trim(theRecord.get("ParentGroupId"));
049                String codeSystemVersionId = myUploadProperties.getProperty(LOINC_CODESYSTEM_VERSION.getCode());
050                String valueSetId;
051                if (codeSystemVersionId != null) {
052                        valueSetId = parentGroupId + "-" + codeSystemVersionId;
053                } else {
054                        valueSetId = parentGroupId;
055                }
056                String parentGroupName = trim(theRecord.get("ParentGroup"));
057
058                getValueSet(valueSetId, LoincGroupFileHandler.VS_URI_PREFIX + parentGroupId, parentGroupName, null);
059        }
060}