001/*- 002 * #%L 003 * HAPI FHIR JPA Server 004 * %% 005 * Copyright (C) 2014 - 2024 Smile CDR, Inc. 006 * %% 007 * Licensed under the Apache License, Version 2.0 (the "License"); 008 * you may not use this file except in compliance with the License. 009 * You may obtain a copy of the License at 010 * 011 * http://www.apache.org/licenses/LICENSE-2.0 012 * 013 * Unless required by applicable law or agreed to in writing, software 014 * distributed under the License is distributed on an "AS IS" BASIS, 015 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 016 * See the License for the specific language governing permissions and 017 * limitations under the License. 018 * #L% 019 */ 020package ca.uhn.fhir.jpa.term.loinc; 021 022import ca.uhn.fhir.jpa.entity.TermConcept; 023import ca.uhn.fhir.jpa.term.IZipContentsHandlerCsv; 024import ca.uhn.fhir.jpa.term.api.ITermLoaderSvc; 025import org.apache.commons.csv.CSVRecord; 026import org.hl7.fhir.r4.model.ConceptMap; 027import org.hl7.fhir.r4.model.ValueSet; 028 029import java.util.*; 030 031import static ca.uhn.fhir.jpa.term.loinc.LoincUploadPropertiesEnum.LOINC_CODESYSTEM_VERSION; 032import static org.apache.commons.lang3.StringUtils.trim; 033 034public class LoincUniversalOrderSetHandler extends BaseLoincHandler implements IZipContentsHandlerCsv { 035 036 public static final String VS_ID_BASE = "loinc-universal-order-set"; 037 public static final String VS_URI = "http://loinc.org/vs/loinc-universal-order-set"; 038 public static final String VS_NAME = "LOINC Universal Order Set"; 039 040 public LoincUniversalOrderSetHandler( 041 Map<String, TermConcept> theCode2concept, 042 List<ValueSet> theValueSets, 043 List<ConceptMap> theConceptMaps, 044 Properties theUploadProperties) { 045 super(theCode2concept, theValueSets, theConceptMaps, theUploadProperties); 046 } 047 048 @Override 049 public void accept(CSVRecord theRecord) { 050 String loincNumber = trim(theRecord.get("LOINC_NUM")); 051 String displayName = trim(theRecord.get("LONG_COMMON_NAME")); 052 String orderObs = trim(theRecord.get("ORDER_OBS")); 053 054 String codeSystemVersionId = myUploadProperties.getProperty(LOINC_CODESYSTEM_VERSION.getCode()); 055 String valueSetId; 056 if (codeSystemVersionId != null) { 057 valueSetId = VS_ID_BASE + "-" + codeSystemVersionId; 058 } else { 059 valueSetId = VS_ID_BASE; 060 } 061 062 ValueSet valueSet = getValueSet(valueSetId, VS_URI, VS_NAME, null); 063 addCodeAsIncludeToValueSet(valueSet, ITermLoaderSvc.LOINC_URI, loincNumber, displayName); 064 } 065}