Package org.hl7.fhir.r4.model

Class MolecularSequence.MolecularSequenceQualityRocComponent

java.lang.Object

org.hl7.fhir.r4.model.Base

org.hl7.fhir.r4.model.Element

org.hl7.fhir.r4.model.BackboneElement

org.hl7.fhir.r4.model.MolecularSequence.MolecularSequenceQualityRocComponent

All Implemented Interfaces:

ca.uhn.fhir.model.api.IElement, Serializable, org.hl7.fhir.instance.model.api.IBase, org.hl7.fhir.instance.model.api.IBaseBackboneElement, org.hl7.fhir.instance.model.api.IBaseElement, org.hl7.fhir.instance.model.api.IBaseHasExtensions, org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions

Enclosing class:

MolecularSequence

public static class MolecularSequence.MolecularSequenceQualityRocComponent
extends BackboneElement
implements org.hl7.fhir.instance.model.api.IBaseBackboneElement

See Also:

• Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
protected List<DecimalType>	fMeasure	Calculated fScore if the GQ score threshold was set to "score" field value.
protected List<IntegerType>	numFN	The number of false negatives if the GQ score threshold was set to "score" field value.
protected List<IntegerType>	numFP	The number of false positives if the GQ score threshold was set to "score" field value.
protected List<IntegerType>	numTP	The number of true positives if the GQ score threshold was set to "score" field value.
protected List<DecimalType>	precision	Calculated precision if the GQ score threshold was set to "score" field value.
protected List<IntegerType>	score	Invidual data point representing the GQ (genotype quality) score threshold.
protected List<DecimalType>	sensitivity	Calculated sensitivity if the GQ score threshold was set to "score" field value.

Fields inherited from class org.hl7.fhir.r4.model.BackboneElement

modifierExtension

Fields inherited from class org.hl7.fhir.r4.model.Element

extension, id

Constructor Summary

Constructors

Constructor	Description
MolecularSequenceQualityRocComponent()	Constructor

Method Summary

Modifier and Type	Method	Description
Base	addChild(String name)
MolecularSequence.MolecularSequenceQualityRocComponent	addFMeasure(BigDecimal value)
DecimalType	addFMeasureElement()
MolecularSequence.MolecularSequenceQualityRocComponent	addNumFN(int value)
IntegerType	addNumFNElement()
MolecularSequence.MolecularSequenceQualityRocComponent	addNumFP(int value)
IntegerType	addNumFPElement()
MolecularSequence.MolecularSequenceQualityRocComponent	addNumTP(int value)
IntegerType	addNumTPElement()
MolecularSequence.MolecularSequenceQualityRocComponent	addPrecision(BigDecimal value)
DecimalType	addPrecisionElement()
MolecularSequence.MolecularSequenceQualityRocComponent	addScore(int value)
IntegerType	addScoreElement()
MolecularSequence.MolecularSequenceQualityRocComponent	addSensitivity(BigDecimal value)
DecimalType	addSensitivityElement()
MolecularSequence.MolecularSequenceQualityRocComponent	copy()
void	copyValues(MolecularSequence.MolecularSequenceQualityRocComponent dst)
boolean	equalsDeep(Base other_)
boolean	equalsShallow(Base other_)
String	fhirType()
List<DecimalType>	getFMeasure()
Property	getNamedProperty(int _hash, String _name, boolean _checkValid)
List<IntegerType>	getNumFN()
List<IntegerType>	getNumFP()
List<IntegerType>	getNumTP()
List<DecimalType>	getPrecision()
Base[]	getProperty(int hash, String name, boolean checkValid)
List<IntegerType>	getScore()
List<DecimalType>	getSensitivity()
String[]	getTypesForProperty(int hash, String name)
boolean	hasFMeasure()
boolean	hasFMeasure(BigDecimal value)
boolean	hasNumFN()
boolean	hasNumFN(int value)
boolean	hasNumFP()
boolean	hasNumFP(int value)
boolean	hasNumTP()
boolean	hasNumTP(int value)
boolean	hasPrecision()
boolean	hasPrecision(BigDecimal value)
boolean	hasScore()
boolean	hasScore(int value)
boolean	hasSensitivity()
boolean	hasSensitivity(BigDecimal value)
boolean	isEmpty()
protected void	listChildren(List<Property> children)
Base	makeProperty(int hash, String name)
void	removeChild(String name, Base value)
MolecularSequence.MolecularSequenceQualityRocComponent	setFMeasure(List<DecimalType> theFMeasure)
MolecularSequence.MolecularSequenceQualityRocComponent	setNumFN(List<IntegerType> theNumFN)
MolecularSequence.MolecularSequenceQualityRocComponent	setNumFP(List<IntegerType> theNumFP)
MolecularSequence.MolecularSequenceQualityRocComponent	setNumTP(List<IntegerType> theNumTP)
MolecularSequence.MolecularSequenceQualityRocComponent	setPrecision(List<DecimalType> thePrecision)
Base	setProperty(int hash, String name, Base value)
Base	setProperty(String name, Base value)
MolecularSequence.MolecularSequenceQualityRocComponent	setScore(List<IntegerType> theScore)
MolecularSequence.MolecularSequenceQualityRocComponent	setSensitivity(List<DecimalType> theSensitivity)

Methods inherited from class org.hl7.fhir.r4.model.BackboneElement

addModifierExtension, addModifierExtension, addModifierExtension, checkNoModifiers, copyExtensions, copyNewExtensions, copyValues, getExtensionByUrl, getExtensionsByUrl, getExtensionsByUrl, getModifierExtension, getModifierExtensionFirstRep, hasExtension, hasExtension, hasModifierExtension, removeExtension, setModifierExtension

Methods inherited from class org.hl7.fhir.r4.model.Element

addExtension, addExtension, addExtension, copyExtensions, copyNewExtensions, copyValues, getExtension, getExtensionFirstRep, getExtensionString, getId, getIdBase, getIdElement, hasExtension, hasExtension, hasId, hasIdElement, isDisallowExtensions, noExtensions, setDisallowExtensions, setExtension, setId, setIdBase, setIdElement

Methods inherited from class org.hl7.fhir.r4.model.Base

castToAddress, castToAnnotation, castToAttachment, castToBase64Binary, castToBoolean, castToCanonical, castToCode, castToCodeableConcept, castToCoding, castToContactDetail, castToContactPoint, castToContributor, castToDataRequirement, castToDate, castToDateTime, castToDecimal, castToDosage, castToDuration, castToElementDefinition, castToExpression, castToExtension, castToHumanName, castToId, castToIdentifier, castToInstant, castToInteger, castToMarkdown, castToMarketingStatus, castToMeta, castToMoney, castToNarrative, castToOid, castToParameterDefinition, castToPeriod, castToPopulation, castToPositiveInt, castToProdCharacteristic, castToProductShelfLife, castToQuantity, castToRange, castToRatio, castToReference, castToRelatedArtifact, castToResource, castToSampledData, castToSignature, castToSimpleQuantity, castToString, castToSubstanceAmount, castToTime, castToTiming, castToTriggerDefinition, castToType, castToUnsignedInt, castToUri, castToUrl, castToUsageContext, castToXhtml, castToXhtmlString, children, clearUserData, compareDeep, compareDeep, compareDeep, compareDeep, compareValues, compareValues, copyValues, dateTimeValue, equals, getChildByName, getChildValueByName, getFormatCommentsPost, getFormatCommentsPre, getNamedProperty, getUserData, getUserInt, getUserString, getXhtml, hasFormatComment, hasPrimitiveValue, hasType, hasUserData, isBooleanPrimitive, isDateTime, isMetadataBased, isPrimitive, isResource, listChildrenByName, listChildrenByName, primitiveValue, setUserData, setUserDataINN, setXhtml

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hl7.fhir.instance.model.api.IBase

getFormatCommentsPost, getFormatCommentsPre, getUserData, hasFormatComment, setUserData

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseElement

getUserData, setUserData

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasExtensions

addExtension, getExtension, hasExtension

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions

addModifierExtension, getModifierExtension, hasModifierExtension

Field Details

score

protected List<IntegerType> score

Invidual data point representing the GQ (genotype quality) score threshold.

numTP

protected List<IntegerType> numTP

The number of true positives if the GQ score threshold was set to "score" field value.

numFP

protected List<IntegerType> numFP

The number of false positives if the GQ score threshold was set to "score" field value.

numFN

protected List<IntegerType> numFN

The number of false negatives if the GQ score threshold was set to "score" field value.

precision

protected List<DecimalType> precision

Calculated precision if the GQ score threshold was set to "score" field value.

sensitivity

protected List<DecimalType> sensitivity

Calculated sensitivity if the GQ score threshold was set to "score" field value.

fMeasure

protected List<DecimalType> fMeasure

Calculated fScore if the GQ score threshold was set to "score" field value.

Constructor Details

MolecularSequenceQualityRocComponent

public MolecularSequenceQualityRocComponent()

Constructor

Method Details

getScore

public List<IntegerType> getScore()

Returns:

score (Invidual data point representing the GQ (genotype quality) score threshold.)

setScore

public MolecularSequence.MolecularSequenceQualityRocComponent setScore(List<IntegerType> theScore)

Returns:

Returns a reference to this for easy method chaining

hasScore

public boolean hasScore()

addScoreElement

public IntegerType addScoreElement()

Returns:

score (Invidual data point representing the GQ (genotype quality) score threshold.)

addScore

public MolecularSequence.MolecularSequenceQualityRocComponent addScore(int value)

Parameters:

value - score (Invidual data point representing the GQ (genotype quality) score threshold.)

hasScore

public boolean hasScore(int value)

Parameters:

value - score (Invidual data point representing the GQ (genotype quality) score threshold.)

getNumTP

public List<IntegerType> getNumTP()

Returns:

numTP (The number of true positives if the GQ score threshold was set to "score" field value.)

setNumTP

public MolecularSequence.MolecularSequenceQualityRocComponent setNumTP(List<IntegerType> theNumTP)

Returns:

Returns a reference to this for easy method chaining

hasNumTP

public boolean hasNumTP()

addNumTPElement

public IntegerType addNumTPElement()

Returns:

numTP (The number of true positives if the GQ score threshold was set to "score" field value.)

addNumTP

public MolecularSequence.MolecularSequenceQualityRocComponent addNumTP(int value)

Parameters:

value - numTP (The number of true positives if the GQ score threshold was set to "score" field value.)

hasNumTP

public boolean hasNumTP(int value)

Parameters:

value - numTP (The number of true positives if the GQ score threshold was set to "score" field value.)

getNumFP

public List<IntegerType> getNumFP()

Returns:

numFP (The number of false positives if the GQ score threshold was set to "score" field value.)

setNumFP

public MolecularSequence.MolecularSequenceQualityRocComponent setNumFP(List<IntegerType> theNumFP)

Returns:

Returns a reference to this for easy method chaining

hasNumFP

public boolean hasNumFP()

addNumFPElement

public IntegerType addNumFPElement()

Returns:

numFP (The number of false positives if the GQ score threshold was set to "score" field value.)

addNumFP

public MolecularSequence.MolecularSequenceQualityRocComponent addNumFP(int value)

Parameters:

value - numFP (The number of false positives if the GQ score threshold was set to "score" field value.)

hasNumFP

public boolean hasNumFP(int value)

Parameters:

value - numFP (The number of false positives if the GQ score threshold was set to "score" field value.)

getNumFN

public List<IntegerType> getNumFN()

Returns:

numFN (The number of false negatives if the GQ score threshold was set to "score" field value.)

setNumFN

public MolecularSequence.MolecularSequenceQualityRocComponent setNumFN(List<IntegerType> theNumFN)

Returns:

Returns a reference to this for easy method chaining

hasNumFN

public boolean hasNumFN()

addNumFNElement

public IntegerType addNumFNElement()

Returns:

numFN (The number of false negatives if the GQ score threshold was set to "score" field value.)

addNumFN

public MolecularSequence.MolecularSequenceQualityRocComponent addNumFN(int value)

Parameters:

value - numFN (The number of false negatives if the GQ score threshold was set to "score" field value.)

hasNumFN

public boolean hasNumFN(int value)

Parameters:

value - numFN (The number of false negatives if the GQ score threshold was set to "score" field value.)

getPrecision

public List<DecimalType> getPrecision()

Returns:

precision (Calculated precision if the GQ score threshold was set to "score" field value.)

setPrecision

public MolecularSequence.MolecularSequenceQualityRocComponent setPrecision(List<DecimalType> thePrecision)

Returns:

Returns a reference to this for easy method chaining

hasPrecision

public boolean hasPrecision()

addPrecisionElement

public DecimalType addPrecisionElement()

Returns:

precision (Calculated precision if the GQ score threshold was set to "score" field value.)

addPrecision

public MolecularSequence.MolecularSequenceQualityRocComponent addPrecision(BigDecimal value)

Parameters:

value - precision (Calculated precision if the GQ score threshold was set to "score" field value.)

hasPrecision

public boolean hasPrecision(BigDecimal value)

Parameters:

value - precision (Calculated precision if the GQ score threshold was set to "score" field value.)

getSensitivity

public List<DecimalType> getSensitivity()

Returns:

sensitivity (Calculated sensitivity if the GQ score threshold was set to "score" field value.)

setSensitivity

public MolecularSequence.MolecularSequenceQualityRocComponent setSensitivity(List<DecimalType> theSensitivity)

Returns:

Returns a reference to this for easy method chaining

hasSensitivity

public boolean hasSensitivity()

addSensitivityElement

public DecimalType addSensitivityElement()

Returns:

sensitivity (Calculated sensitivity if the GQ score threshold was set to "score" field value.)

addSensitivity

public MolecularSequence.MolecularSequenceQualityRocComponent addSensitivity(BigDecimal value)

Parameters:

value - sensitivity (Calculated sensitivity if the GQ score threshold was set to "score" field value.)

hasSensitivity

public boolean hasSensitivity(BigDecimal value)

Parameters:

value - sensitivity (Calculated sensitivity if the GQ score threshold was set to "score" field value.)

getFMeasure

public List<DecimalType> getFMeasure()

Returns:

fMeasure (Calculated fScore if the GQ score threshold was set to "score" field value.)

setFMeasure

public MolecularSequence.MolecularSequenceQualityRocComponent setFMeasure(List<DecimalType> theFMeasure)

Returns:

Returns a reference to this for easy method chaining

hasFMeasure

public boolean hasFMeasure()

addFMeasureElement

public DecimalType addFMeasureElement()

Returns:

fMeasure (Calculated fScore if the GQ score threshold was set to "score" field value.)

addFMeasure

public MolecularSequence.MolecularSequenceQualityRocComponent addFMeasure(BigDecimal value)

Parameters:

value - fMeasure (Calculated fScore if the GQ score threshold was set to "score" field value.)

hasFMeasure

public boolean hasFMeasure(BigDecimal value)

Parameters:

value - fMeasure (Calculated fScore if the GQ score threshold was set to "score" field value.)

listChildren

protected void listChildren(List<Property> children)

Overrides:

listChildren in class BackboneElement

getNamedProperty

public Property getNamedProperty(int _hash,
 String _name,
 boolean _checkValid)
                          throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getNamedProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

getProperty

public Base[] getProperty(int hash,
 String name,
 boolean checkValid)
                   throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

setProperty

public Base setProperty(int hash,
 String name,
 Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

setProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

setProperty

public Base setProperty(String name,
 Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

setProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

removeChild

public void removeChild(String name,
 Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

removeChild in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

makeProperty

public Base makeProperty(int hash,
 String name)
                  throws org.hl7.fhir.exceptions.FHIRException

Overrides:

makeProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

getTypesForProperty

public String[] getTypesForProperty(int hash,
 String name)
                             throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getTypesForProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

addChild

public Base addChild(String name)
              throws org.hl7.fhir.exceptions.FHIRException

Overrides:

addChild in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

copy

public MolecularSequence.MolecularSequenceQualityRocComponent copy()

Specified by:

copy in class BackboneElement

copyValues

public void copyValues(MolecularSequence.MolecularSequenceQualityRocComponent dst)

equalsDeep

public boolean equalsDeep(Base other_)

Overrides:

equalsDeep in class BackboneElement

equalsShallow

public boolean equalsShallow(Base other_)

Overrides:

equalsShallow in class BackboneElement

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface org.hl7.fhir.instance.model.api.IBase

Overrides:

isEmpty in class BackboneElement

fhirType

public String fhirType()

Specified by:

fhirType in interface org.hl7.fhir.instance.model.api.IBase

Overrides:

fhirType in class BackboneElement