Package org.hl7.fhir.r4.model
Class MolecularSequence.MolecularSequenceQualityRocComponent
java.lang.Object
org.hl7.fhir.r4.model.Base
org.hl7.fhir.r4.model.Element
org.hl7.fhir.r4.model.BackboneElement
org.hl7.fhir.r4.model.MolecularSequence.MolecularSequenceQualityRocComponent
- All Implemented Interfaces:
ca.uhn.fhir.model.api.IElement
,Serializable
,org.hl7.fhir.instance.model.api.IBase
,org.hl7.fhir.instance.model.api.IBaseBackboneElement
,org.hl7.fhir.instance.model.api.IBaseElement
,org.hl7.fhir.instance.model.api.IBaseHasExtensions
,org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions
- Enclosing class:
MolecularSequence
public static class MolecularSequence.MolecularSequenceQualityRocComponent
extends BackboneElement
implements org.hl7.fhir.instance.model.api.IBaseBackboneElement
- See Also:
-
Field Summary
Modifier and TypeFieldDescriptionprotected List
<DecimalType> Calculated fScore if the GQ score threshold was set to "score" field value.protected List
<IntegerType> The number of false negatives if the GQ score threshold was set to "score" field value.protected List
<IntegerType> The number of false positives if the GQ score threshold was set to "score" field value.protected List
<IntegerType> The number of true positives if the GQ score threshold was set to "score" field value.protected List
<DecimalType> Calculated precision if the GQ score threshold was set to "score" field value.protected List
<IntegerType> Invidual data point representing the GQ (genotype quality) score threshold.protected List
<DecimalType> Calculated sensitivity if the GQ score threshold was set to "score" field value.Fields inherited from class org.hl7.fhir.r4.model.BackboneElement
modifierExtension
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Constructor Summary
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Method Summary
Modifier and TypeMethodDescriptionaddFMeasure
(BigDecimal value) addNumFN
(int value) addNumFP
(int value) addNumTP
(int value) addPrecision
(BigDecimal value) addScore
(int value) addSensitivity
(BigDecimal value) copy()
void
boolean
equalsDeep
(Base other_) boolean
equalsShallow
(Base other_) fhirType()
getNamedProperty
(int _hash, String _name, boolean _checkValid) getNumFN()
getNumFP()
getNumTP()
Base[]
getProperty
(int hash, String name, boolean checkValid) getScore()
String[]
getTypesForProperty
(int hash, String name) boolean
boolean
hasFMeasure
(BigDecimal value) boolean
hasNumFN()
boolean
hasNumFN
(int value) boolean
hasNumFP()
boolean
hasNumFP
(int value) boolean
hasNumTP()
boolean
hasNumTP
(int value) boolean
boolean
hasPrecision
(BigDecimal value) boolean
hasScore()
boolean
hasScore
(int value) boolean
boolean
hasSensitivity
(BigDecimal value) boolean
isEmpty()
protected void
listChildren
(List<Property> children) makeProperty
(int hash, String name) void
removeChild
(String name, Base value) setFMeasure
(List<DecimalType> theFMeasure) setNumFN
(List<IntegerType> theNumFN) setNumFP
(List<IntegerType> theNumFP) setNumTP
(List<IntegerType> theNumTP) setPrecision
(List<DecimalType> thePrecision) setProperty
(int hash, String name, Base value) setProperty
(String name, Base value) setScore
(List<IntegerType> theScore) setSensitivity
(List<DecimalType> theSensitivity) Methods inherited from class org.hl7.fhir.r4.model.BackboneElement
addModifierExtension, addModifierExtension, addModifierExtension, checkNoModifiers, copyExtensions, copyNewExtensions, copyValues, getExtensionByUrl, getExtensionsByUrl, getExtensionsByUrl, getModifierExtension, getModifierExtensionFirstRep, hasExtension, hasExtension, hasModifierExtension, removeExtension, setModifierExtension
Methods inherited from class org.hl7.fhir.r4.model.Element
addExtension, addExtension, addExtension, copyExtensions, copyNewExtensions, copyValues, getExtension, getExtensionFirstRep, getExtensionString, getId, getIdBase, getIdElement, hasExtension, hasExtension, hasId, hasIdElement, isDisallowExtensions, noExtensions, setDisallowExtensions, setExtension, setId, setIdBase, setIdElement
Methods inherited from class org.hl7.fhir.r4.model.Base
castToAddress, castToAnnotation, castToAttachment, castToBase64Binary, castToBoolean, castToCanonical, castToCode, castToCodeableConcept, castToCoding, castToContactDetail, castToContactPoint, castToContributor, castToDataRequirement, castToDate, castToDateTime, castToDecimal, castToDosage, castToDuration, castToElementDefinition, castToExpression, castToExtension, castToHumanName, castToId, castToIdentifier, castToInstant, castToInteger, castToMarkdown, castToMarketingStatus, castToMeta, castToMoney, castToNarrative, castToOid, castToParameterDefinition, castToPeriod, castToPopulation, castToPositiveInt, castToProdCharacteristic, castToProductShelfLife, castToQuantity, castToRange, castToRatio, castToReference, castToRelatedArtifact, castToResource, castToSampledData, castToSignature, castToSimpleQuantity, castToString, castToSubstanceAmount, castToTime, castToTiming, castToTriggerDefinition, castToType, castToUnsignedInt, castToUri, castToUrl, castToUsageContext, castToXhtml, castToXhtmlString, children, clearUserData, compareDeep, compareDeep, compareDeep, compareDeep, compareValues, compareValues, copyValues, dateTimeValue, equals, getChildByName, getFormatCommentsPost, getFormatCommentsPre, getNamedProperty, getUserData, getUserInt, getUserString, getXhtml, hasFormatComment, hasPrimitiveValue, hasType, hasUserData, isBooleanPrimitive, isDateTime, isMetadataBased, isPrimitive, isResource, listChildrenByName, listChildrenByName, primitiveValue, setUserData, setUserDataINN
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
Methods inherited from interface org.hl7.fhir.instance.model.api.IBase
getFormatCommentsPost, getFormatCommentsPre, getUserData, hasFormatComment, setUserData
Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseElement
getUserData, setUserData
Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasExtensions
addExtension, getExtension, hasExtension
Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions
addModifierExtension, getModifierExtension, hasModifierExtension
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Field Details
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score
Invidual data point representing the GQ (genotype quality) score threshold. -
numTP
The number of true positives if the GQ score threshold was set to "score" field value. -
numFP
The number of false positives if the GQ score threshold was set to "score" field value. -
numFN
The number of false negatives if the GQ score threshold was set to "score" field value. -
precision
Calculated precision if the GQ score threshold was set to "score" field value. -
sensitivity
Calculated sensitivity if the GQ score threshold was set to "score" field value. -
fMeasure
Calculated fScore if the GQ score threshold was set to "score" field value.
-
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Constructor Details
-
MolecularSequenceQualityRocComponent
public MolecularSequenceQualityRocComponent()Constructor
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Method Details
-
getScore
- Returns:
score
(Invidual data point representing the GQ (genotype quality) score threshold.)
-
setScore
- Returns:
- Returns a reference to
this
for easy method chaining
-
hasScore
-
addScoreElement
- Returns:
score
(Invidual data point representing the GQ (genotype quality) score threshold.)
-
addScore
- Parameters:
value
-score
(Invidual data point representing the GQ (genotype quality) score threshold.)
-
hasScore
- Parameters:
value
-score
(Invidual data point representing the GQ (genotype quality) score threshold.)
-
getNumTP
- Returns:
numTP
(The number of true positives if the GQ score threshold was set to "score" field value.)
-
setNumTP
- Returns:
- Returns a reference to
this
for easy method chaining
-
hasNumTP
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addNumTPElement
- Returns:
numTP
(The number of true positives if the GQ score threshold was set to "score" field value.)
-
addNumTP
- Parameters:
value
-numTP
(The number of true positives if the GQ score threshold was set to "score" field value.)
-
hasNumTP
- Parameters:
value
-numTP
(The number of true positives if the GQ score threshold was set to "score" field value.)
-
getNumFP
- Returns:
numFP
(The number of false positives if the GQ score threshold was set to "score" field value.)
-
setNumFP
- Returns:
- Returns a reference to
this
for easy method chaining
-
hasNumFP
-
addNumFPElement
- Returns:
numFP
(The number of false positives if the GQ score threshold was set to "score" field value.)
-
addNumFP
- Parameters:
value
-numFP
(The number of false positives if the GQ score threshold was set to "score" field value.)
-
hasNumFP
- Parameters:
value
-numFP
(The number of false positives if the GQ score threshold was set to "score" field value.)
-
getNumFN
- Returns:
numFN
(The number of false negatives if the GQ score threshold was set to "score" field value.)
-
setNumFN
- Returns:
- Returns a reference to
this
for easy method chaining
-
hasNumFN
-
addNumFNElement
- Returns:
numFN
(The number of false negatives if the GQ score threshold was set to "score" field value.)
-
addNumFN
- Parameters:
value
-numFN
(The number of false negatives if the GQ score threshold was set to "score" field value.)
-
hasNumFN
- Parameters:
value
-numFN
(The number of false negatives if the GQ score threshold was set to "score" field value.)
-
getPrecision
- Returns:
precision
(Calculated precision if the GQ score threshold was set to "score" field value.)
-
setPrecision
public MolecularSequence.MolecularSequenceQualityRocComponent setPrecision(List<DecimalType> thePrecision) - Returns:
- Returns a reference to
this
for easy method chaining
-
hasPrecision
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addPrecisionElement
- Returns:
precision
(Calculated precision if the GQ score threshold was set to "score" field value.)
-
addPrecision
- Parameters:
value
-precision
(Calculated precision if the GQ score threshold was set to "score" field value.)
-
hasPrecision
- Parameters:
value
-precision
(Calculated precision if the GQ score threshold was set to "score" field value.)
-
getSensitivity
- Returns:
sensitivity
(Calculated sensitivity if the GQ score threshold was set to "score" field value.)
-
setSensitivity
public MolecularSequence.MolecularSequenceQualityRocComponent setSensitivity(List<DecimalType> theSensitivity) - Returns:
- Returns a reference to
this
for easy method chaining
-
hasSensitivity
-
addSensitivityElement
- Returns:
sensitivity
(Calculated sensitivity if the GQ score threshold was set to "score" field value.)
-
addSensitivity
- Parameters:
value
-sensitivity
(Calculated sensitivity if the GQ score threshold was set to "score" field value.)
-
hasSensitivity
- Parameters:
value
-sensitivity
(Calculated sensitivity if the GQ score threshold was set to "score" field value.)
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getFMeasure
- Returns:
fMeasure
(Calculated fScore if the GQ score threshold was set to "score" field value.)
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setFMeasure
public MolecularSequence.MolecularSequenceQualityRocComponent setFMeasure(List<DecimalType> theFMeasure) - Returns:
- Returns a reference to
this
for easy method chaining
-
hasFMeasure
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addFMeasureElement
- Returns:
fMeasure
(Calculated fScore if the GQ score threshold was set to "score" field value.)
-
addFMeasure
- Parameters:
value
-fMeasure
(Calculated fScore if the GQ score threshold was set to "score" field value.)
-
hasFMeasure
- Parameters:
value
-fMeasure
(Calculated fScore if the GQ score threshold was set to "score" field value.)
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listChildren
- Overrides:
listChildren
in classBackboneElement
-
getNamedProperty
public Property getNamedProperty(int _hash, String _name, boolean _checkValid) throws org.hl7.fhir.exceptions.FHIRException - Overrides:
getNamedProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
-
getProperty
public Base[] getProperty(int hash, String name, boolean checkValid) throws org.hl7.fhir.exceptions.FHIRException - Overrides:
getProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
-
setProperty
public Base setProperty(int hash, String name, Base value) throws org.hl7.fhir.exceptions.FHIRException - Overrides:
setProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
-
setProperty
- Overrides:
setProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
-
removeChild
- Overrides:
removeChild
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
-
makeProperty
- Overrides:
makeProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
-
getTypesForProperty
public String[] getTypesForProperty(int hash, String name) throws org.hl7.fhir.exceptions.FHIRException - Overrides:
getTypesForProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
-
addChild
- Overrides:
addChild
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
-
copy
- Specified by:
copy
in classBackboneElement
-
copyValues
-
equalsDeep
- Overrides:
equalsDeep
in classBackboneElement
-
equalsShallow
- Overrides:
equalsShallow
in classBackboneElement
-
isEmpty
- Specified by:
isEmpty
in interfaceorg.hl7.fhir.instance.model.api.IBase
- Overrides:
isEmpty
in classBackboneElement
-
fhirType
- Specified by:
fhirType
in interfaceorg.hl7.fhir.instance.model.api.IBase
- Overrides:
fhirType
in classBackboneElement
-