Package org.hl7.fhir.r4.model
Class SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent
java.lang.Object
org.hl7.fhir.r4.model.Base
org.hl7.fhir.r4.model.Element
org.hl7.fhir.r4.model.BackboneElement
org.hl7.fhir.r4.model.SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent
- All Implemented Interfaces:
ca.uhn.fhir.model.api.IElement
,Serializable
,org.hl7.fhir.instance.model.api.IBase
,org.hl7.fhir.instance.model.api.IBaseBackboneElement
,org.hl7.fhir.instance.model.api.IBaseElement
,org.hl7.fhir.instance.model.api.IBaseHasExtensions
,org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions
- Enclosing class:
SubstanceNucleicAcid
public static class SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent
extends BackboneElement
implements org.hl7.fhir.instance.model.api.IBaseBackboneElement
- See Also:
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Field Summary
Modifier and TypeFieldDescriptionprotected CodeableConcept
The nucleotide present at the 5? terminal shall be specified based on a controlled vocabulary.protected IntegerType
The length of the sequence shall be captured.The linkages between sugar residues will also be captured.protected StringType
Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes.protected Attachment
(TBC).protected IntegerType
Index of linear sequences of nucleic acids in order of decreasing length.5.3.6.8.1 Sugar ID (Mandatory).protected CodeableConcept
The nucleotide present at the 3? terminal shall be specified based on a controlled vocabulary.Fields inherited from class org.hl7.fhir.r4.model.BackboneElement
modifierExtension
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Constructor Summary
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Method Summary
Modifier and TypeMethodDescriptionaddSugar()
copy()
void
boolean
equalsDeep
(Base other_) boolean
equalsShallow
(Base other_) fhirType()
int
getNamedProperty
(int _hash, String _name, boolean _checkValid) Base[]
getProperty
(int hash, String name, boolean checkValid) int
getSugar()
String[]
getTypesForProperty
(int hash, String name) boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
hasSugar()
boolean
boolean
isEmpty()
protected void
listChildren
(List<Property> children) makeProperty
(int hash, String name) void
removeChild
(String name, Base value) setFivePrime
(CodeableConcept value) setLength
(int value) setLengthElement
(IntegerType value) setProperty
(int hash, String name, Base value) setProperty
(String name, Base value) setSequence
(String value) setSequenceAttachment
(Attachment value) setSequenceElement
(StringType value) setSubunit
(int value) setSubunitElement
(IntegerType value) setThreePrime
(CodeableConcept value) Methods inherited from class org.hl7.fhir.r4.model.BackboneElement
addModifierExtension, addModifierExtension, addModifierExtension, checkNoModifiers, copyExtensions, copyNewExtensions, copyValues, getExtensionByUrl, getExtensionsByUrl, getExtensionsByUrl, getModifierExtension, getModifierExtensionFirstRep, hasExtension, hasExtension, hasModifierExtension, removeExtension, setModifierExtension
Methods inherited from class org.hl7.fhir.r4.model.Element
addExtension, addExtension, addExtension, copyExtensions, copyNewExtensions, copyValues, getExtension, getExtensionFirstRep, getExtensionString, getId, getIdBase, getIdElement, hasExtension, hasExtension, hasId, hasIdElement, isDisallowExtensions, noExtensions, setDisallowExtensions, setExtension, setId, setIdBase, setIdElement
Methods inherited from class org.hl7.fhir.r4.model.Base
castToAddress, castToAnnotation, castToAttachment, castToBase64Binary, castToBoolean, castToCanonical, castToCode, castToCodeableConcept, castToCoding, castToContactDetail, castToContactPoint, castToContributor, castToDataRequirement, castToDate, castToDateTime, castToDecimal, castToDosage, castToDuration, castToElementDefinition, castToExpression, castToExtension, castToHumanName, castToId, castToIdentifier, castToInstant, castToInteger, castToMarkdown, castToMarketingStatus, castToMeta, castToMoney, castToNarrative, castToOid, castToParameterDefinition, castToPeriod, castToPopulation, castToPositiveInt, castToProdCharacteristic, castToProductShelfLife, castToQuantity, castToRange, castToRatio, castToReference, castToRelatedArtifact, castToResource, castToSampledData, castToSignature, castToSimpleQuantity, castToString, castToSubstanceAmount, castToTime, castToTiming, castToTriggerDefinition, castToType, castToUnsignedInt, castToUri, castToUrl, castToUsageContext, castToXhtml, castToXhtmlString, children, clearUserData, compareDeep, compareDeep, compareDeep, compareDeep, compareValues, compareValues, copyValues, dateTimeValue, equals, getChildByName, getFormatCommentsPost, getFormatCommentsPre, getNamedProperty, getUserData, getUserInt, getUserString, getXhtml, hasFormatComment, hasPrimitiveValue, hasType, hasUserData, isBooleanPrimitive, isDateTime, isMetadataBased, isPrimitive, isResource, listChildrenByName, listChildrenByName, primitiveValue, setUserData, setUserDataINN
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
Methods inherited from interface org.hl7.fhir.instance.model.api.IBase
getFormatCommentsPost, getFormatCommentsPre, getUserData, hasFormatComment, setUserData
Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseElement
getUserData, setUserData
Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasExtensions
addExtension, getExtension, hasExtension
Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions
addModifierExtension, getModifierExtension, hasModifierExtension
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Field Details
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subunit
Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts. -
sequence
Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured. -
length
The length of the sequence shall be captured. -
sequenceAttachment
(TBC). -
fivePrime
The nucleotide present at the 5? terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5? prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant. -
threePrime
The nucleotide present at the 3? terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5? prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant. -
linkage
The linkages between sugar residues will also be captured. -
sugar
5.3.6.8.1 Sugar ID (Mandatory).
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Constructor Details
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SubstanceNucleicAcidSubunitComponent
public SubstanceNucleicAcidSubunitComponent()Constructor
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Method Details
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getSubunitElement
- Returns:
subunit
(Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.). This is the underlying object with id, value and extensions. The accessor "getSubunit" gives direct access to the value
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hasSubunitElement
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hasSubunit
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setSubunitElement
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setSubunitElement(IntegerType value) - Parameters:
value
-subunit
(Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.). This is the underlying object with id, value and extensions. The accessor "getSubunit" gives direct access to the value
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getSubunit
- Returns:
- Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.
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setSubunit
- Parameters:
value
- Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.
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getSequenceElement
- Returns:
sequence
(Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.). This is the underlying object with id, value and extensions. The accessor "getSequence" gives direct access to the value
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hasSequenceElement
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hasSequence
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setSequenceElement
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setSequenceElement(StringType value) - Parameters:
value
-sequence
(Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.). This is the underlying object with id, value and extensions. The accessor "getSequence" gives direct access to the value
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getSequence
- Returns:
- Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.
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setSequence
- Parameters:
value
- Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.
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getLengthElement
- Returns:
length
(The length of the sequence shall be captured.). This is the underlying object with id, value and extensions. The accessor "getLength" gives direct access to the value
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hasLengthElement
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hasLength
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setLengthElement
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setLengthElement(IntegerType value) - Parameters:
value
-length
(The length of the sequence shall be captured.). This is the underlying object with id, value and extensions. The accessor "getLength" gives direct access to the value
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getLength
- Returns:
- The length of the sequence shall be captured.
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setLength
- Parameters:
value
- The length of the sequence shall be captured.
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getSequenceAttachment
- Returns:
sequenceAttachment
((TBC).)
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hasSequenceAttachment
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setSequenceAttachment
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setSequenceAttachment(Attachment value) - Parameters:
value
-sequenceAttachment
((TBC).)
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getFivePrime
- Returns:
fivePrime
(The nucleotide present at the 5? terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5? prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant.)
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hasFivePrime
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setFivePrime
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setFivePrime(CodeableConcept value) - Parameters:
value
-fivePrime
(The nucleotide present at the 5? terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5? prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant.)
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getThreePrime
- Returns:
threePrime
(The nucleotide present at the 3? terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5? prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant.)
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hasThreePrime
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setThreePrime
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setThreePrime(CodeableConcept value) - Parameters:
value
-threePrime
(The nucleotide present at the 3? terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5? prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant.)
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getLinkage
- Returns:
linkage
(The linkages between sugar residues will also be captured.)
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setLinkage
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setLinkage(List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent> theLinkage) - Returns:
- Returns a reference to
this
for easy method chaining
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hasLinkage
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addLinkage
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addLinkage
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getLinkageFirstRep
- Returns:
- The first repetition of repeating field
linkage
, creating it if it does not already exist
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getSugar
- Returns:
sugar
(5.3.6.8.1 Sugar ID (Mandatory).)
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setSugar
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setSugar(List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent> theSugar) - Returns:
- Returns a reference to
this
for easy method chaining
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hasSugar
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addSugar
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addSugar
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getSugarFirstRep
- Returns:
- The first repetition of repeating field
sugar
, creating it if it does not already exist
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listChildren
- Overrides:
listChildren
in classBackboneElement
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getNamedProperty
public Property getNamedProperty(int _hash, String _name, boolean _checkValid) throws org.hl7.fhir.exceptions.FHIRException - Overrides:
getNamedProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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getProperty
public Base[] getProperty(int hash, String name, boolean checkValid) throws org.hl7.fhir.exceptions.FHIRException - Overrides:
getProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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setProperty
public Base setProperty(int hash, String name, Base value) throws org.hl7.fhir.exceptions.FHIRException - Overrides:
setProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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setProperty
- Overrides:
setProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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removeChild
- Overrides:
removeChild
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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makeProperty
- Overrides:
makeProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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getTypesForProperty
public String[] getTypesForProperty(int hash, String name) throws org.hl7.fhir.exceptions.FHIRException - Overrides:
getTypesForProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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addChild
- Overrides:
addChild
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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copy
- Specified by:
copy
in classBackboneElement
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copyValues
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equalsDeep
- Overrides:
equalsDeep
in classBackboneElement
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equalsShallow
- Overrides:
equalsShallow
in classBackboneElement
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isEmpty
- Specified by:
isEmpty
in interfaceorg.hl7.fhir.instance.model.api.IBase
- Overrides:
isEmpty
in classBackboneElement
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fhirType
- Specified by:
fhirType
in interfaceorg.hl7.fhir.instance.model.api.IBase
- Overrides:
fhirType
in classBackboneElement
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