Package org.hl7.fhir.r5.model

Class SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent

java.lang.Object

org.hl7.fhir.r5.model.Base

org.hl7.fhir.r5.model.Element

org.hl7.fhir.r5.model.BackboneElement

org.hl7.fhir.r5.model.SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent

All Implemented Interfaces:

ca.uhn.fhir.model.api.IElement, Serializable, org.hl7.fhir.instance.model.api.IBase, org.hl7.fhir.instance.model.api.IBaseBackboneElement, org.hl7.fhir.instance.model.api.IBaseElement, org.hl7.fhir.instance.model.api.IBaseHasExtensions, org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions

Enclosing class:

SubstanceNucleicAcid

public static class SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent
extends BackboneElement
implements org.hl7.fhir.instance.model.api.IBaseBackboneElement

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class org.hl7.fhir.r5.model.Base

Base.ProfileSource, Base.ValidationInfo, Base.ValidationMode, Base.ValidationReason

Field Summary

Fields

Modifier and Type	Field	Description
protected CodeableConcept	fivePrime	The nucleotide present at the 5? terminal shall be specified based on a controlled vocabulary.
protected IntegerType	length	The length of the sequence shall be captured.
protected List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent>	linkage	The linkages between sugar residues will also be captured.
protected StringType	sequence	Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes.
protected Attachment	sequenceAttachment	(TBC).
protected IntegerType	subunit	Index of linear sequences of nucleic acids in order of decreasing length.
protected List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent>	sugar	5.3.6.8.1 Sugar ID (Mandatory).
protected CodeableConcept	threePrime	The nucleotide present at the 3? terminal shall be specified based on a controlled vocabulary.

Fields inherited from class org.hl7.fhir.r5.model.BackboneElement

modifierExtension

Fields inherited from class org.hl7.fhir.r5.model.Element

extension, id

Constructor Summary

Constructors

Constructor	Description
SubstanceNucleicAcidSubunitComponent()	Constructor

Method Summary

Modifier and Type	Method	Description
Base	addChild(String name)
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent	addLinkage()
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent	addLinkage(SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent t)
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent	addSugar()
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent	addSugar(SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent t)
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent	copy()
void	copyValues(SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent dst)
boolean	equalsDeep(Base other_)
boolean	equalsShallow(Base other_)
String	fhirType()
CodeableConcept	getFivePrime()
int	getLength()
IntegerType	getLengthElement()
List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent>	getLinkage()
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent	getLinkageFirstRep()
Property	getNamedProperty(int _hash, String _name, boolean _checkValid)
Base[]	getProperty(int hash, String name, boolean checkValid)
String	getSequence()
Attachment	getSequenceAttachment()
StringType	getSequenceElement()
int	getSubunit()
IntegerType	getSubunitElement()
List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent>	getSugar()
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent	getSugarFirstRep()
CodeableConcept	getThreePrime()
String[]	getTypesForProperty(int hash, String name)
boolean	hasFivePrime()
boolean	hasLength()
boolean	hasLengthElement()
boolean	hasLinkage()
boolean	hasSequence()
boolean	hasSequenceAttachment()
boolean	hasSequenceElement()
boolean	hasSubunit()
boolean	hasSubunitElement()
boolean	hasSugar()
boolean	hasThreePrime()
boolean	isEmpty()
protected void	listChildren(List<Property> children)
Base	makeProperty(int hash, String name)
void	removeChild(String name, Base value)
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent	setFivePrime(CodeableConcept value)
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent	setLength(int value)
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent	setLengthElement(IntegerType value)
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent	setLinkage(List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent> theLinkage)
Base	setProperty(int hash, String name, Base value)
Base	setProperty(String name, Base value)
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent	setSequence(String value)
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent	setSequenceAttachment(Attachment value)
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent	setSequenceElement(StringType value)
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent	setSubunit(int value)
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent	setSubunitElement(IntegerType value)
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent	setSugar(List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent> theSugar)
SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent	setThreePrime(CodeableConcept value)

Methods inherited from class org.hl7.fhir.r5.model.BackboneElement

addModifierExtension, addModifierExtension, addModifierExtension, checkNoModifiers, copyExtensions, copyNewExtensions, copyValues, getExtensionByUrl, getExtensionsByUrl, getExtensionsByUrl, getModifierExtension, getModifierExtensionFirstRep, hasExtension, hasExtension, hasModifierExtension, removeExtension, setModifierExtension

Methods inherited from class org.hl7.fhir.r5.model.Element

addExtension, addExtension, addExtension, copyExtensions, copyNewExtensions, copyValues, getExtension, getExtensionFirstRep, getExtensionString, getExtensionString, getFHIRPublicationVersion, getId, getIdBase, getIdElement, getStandardsStatus, hasExtension, hasExtension, hasId, hasIdElement, isDisallowExtensions, noExtensions, setDisallowExtensions, setExtension, setId, setIdBase, setIdElement, setStandardsStatus

Methods inherited from class org.hl7.fhir.r5.model.Base

addDefinition, addFormatCommentsPost, addFormatCommentsPre, addValidationMessage, canHavePrimitiveValue, children, clearUserData, compareDeep, compareDeep, compareDeep, compareDeep, compareValues, compareValues, copyFormatComments, copyUserData, copyValues, dateTimeValue, equals, getChildByName, getChildValueByName, getFormatCommentsPost, getFormatCommentsPre, getNamedProperty, getUserData, getUserInt, getUserString, getValidationInfo, getValidationMessages, getXhtml, hasFormatComment, hasFormatCommentPost, hasFormatCommentPre, hasPrimitiveValue, hasType, hasUserData, hasValidated, hasValidationInfo, hasValidationMessages, isBooleanPrimitive, isCopyUserData, isDateTime, isMetadataBased, isPrimitive, isResource, listChildrenByName, listChildrenByName, primitiveValue, setCopyUserData, setUserData, setUserDataINN

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hl7.fhir.instance.model.api.IBase

getFormatCommentsPost, getFormatCommentsPre, getUserData, hasFormatComment, setUserData

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseElement

getUserData, setUserData

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasExtensions

addExtension, getExtension, hasExtension

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions

addModifierExtension, getModifierExtension, hasModifierExtension

Field Details

subunit

protected IntegerType subunit

Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.

sequence

protected StringType sequence

Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.

length

protected IntegerType length

The length of the sequence shall be captured.

sequenceAttachment

protected Attachment sequenceAttachment

(TBC).

fivePrime

protected CodeableConcept fivePrime

The nucleotide present at the 5? terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5? prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant.

threePrime

protected CodeableConcept threePrime

The nucleotide present at the 3? terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5? prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant.

linkage

protected List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent> linkage

The linkages between sugar residues will also be captured.

sugar

protected List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent> sugar

5.3.6.8.1 Sugar ID (Mandatory).

Constructor Details

SubstanceNucleicAcidSubunitComponent

public SubstanceNucleicAcidSubunitComponent()

Constructor

Method Details

getSubunitElement

public IntegerType getSubunitElement()

Returns:

subunit (Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.). This is the underlying object with id, value and extensions. The accessor "getSubunit" gives direct access to the value

hasSubunitElement

public boolean hasSubunitElement()

hasSubunit

public boolean hasSubunit()

setSubunitElement

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setSubunitElement(IntegerType value)

Parameters:

value - subunit (Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.). This is the underlying object with id, value and extensions. The accessor "getSubunit" gives direct access to the value

getSubunit

public int getSubunit()

Returns:

Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.

setSubunit

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setSubunit(int value)

Parameters:

value - Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.

getSequenceElement

public StringType getSequenceElement()

Returns:

sequence (Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.). This is the underlying object with id, value and extensions. The accessor "getSequence" gives direct access to the value

hasSequenceElement

public boolean hasSequenceElement()

hasSequence

public boolean hasSequence()

setSequenceElement

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setSequenceElement(StringType value)

Parameters:

value - sequence (Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.). This is the underlying object with id, value and extensions. The accessor "getSequence" gives direct access to the value

getSequence

public String getSequence()

Returns:

Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.

setSequence

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setSequence(String value)

Parameters:

value - Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.

getLengthElement

public IntegerType getLengthElement()

Returns:

length (The length of the sequence shall be captured.). This is the underlying object with id, value and extensions. The accessor "getLength" gives direct access to the value

hasLengthElement

public boolean hasLengthElement()

hasLength

public boolean hasLength()

setLengthElement

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setLengthElement(IntegerType value)

Parameters:

value - length (The length of the sequence shall be captured.). This is the underlying object with id, value and extensions. The accessor "getLength" gives direct access to the value

getLength

public int getLength()

Returns:

The length of the sequence shall be captured.

setLength

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setLength(int value)

Parameters:

value - The length of the sequence shall be captured.

getSequenceAttachment

public Attachment getSequenceAttachment()

Returns:

sequenceAttachment ((TBC).)

hasSequenceAttachment

public boolean hasSequenceAttachment()

setSequenceAttachment

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setSequenceAttachment(Attachment value)

Parameters:

value - sequenceAttachment ((TBC).)

getFivePrime

public CodeableConcept getFivePrime()

Returns:

fivePrime (The nucleotide present at the 5? terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5? prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant.)

hasFivePrime

public boolean hasFivePrime()

setFivePrime

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setFivePrime(CodeableConcept value)

Parameters:

value - fivePrime (The nucleotide present at the 5? terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5? prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant.)

getThreePrime

public CodeableConcept getThreePrime()

Returns:

threePrime (The nucleotide present at the 3? terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5? prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant.)

hasThreePrime

public boolean hasThreePrime()

setThreePrime

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setThreePrime(CodeableConcept value)

Parameters:

value - threePrime (The nucleotide present at the 3? terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5? prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant.)

getLinkage

public List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent> getLinkage()

Returns:

linkage (The linkages between sugar residues will also be captured.)

setLinkage

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setLinkage(List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent> theLinkage)

Returns:

Returns a reference to this for easy method chaining

hasLinkage

public boolean hasLinkage()

addLinkage

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent addLinkage()

addLinkage

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent addLinkage(SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent t)

getLinkageFirstRep

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent getLinkageFirstRep()

Returns:

The first repetition of repeating field linkage, creating it if it does not already exist {3}

getSugar

public List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent> getSugar()

Returns:

sugar (5.3.6.8.1 Sugar ID (Mandatory).)

setSugar

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setSugar(List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent> theSugar)

Returns:

Returns a reference to this for easy method chaining

hasSugar

public boolean hasSugar()

addSugar

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent addSugar()

addSugar

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent addSugar(SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent t)

getSugarFirstRep

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent getSugarFirstRep()

Returns:

The first repetition of repeating field sugar, creating it if it does not already exist {3}

listChildren

protected void listChildren(List<Property> children)

Overrides:

listChildren in class BackboneElement

getNamedProperty

public Property getNamedProperty(int _hash,
 String _name,
 boolean _checkValid)
                          throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getNamedProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

getProperty

public Base[] getProperty(int hash,
 String name,
 boolean checkValid)
                   throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

setProperty

public Base setProperty(int hash,
 String name,
 Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

setProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

setProperty

public Base setProperty(String name,
 Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

setProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

removeChild

public void removeChild(String name,
 Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

removeChild in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

makeProperty

public Base makeProperty(int hash,
 String name)
                  throws org.hl7.fhir.exceptions.FHIRException

Overrides:

makeProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

getTypesForProperty

public String[] getTypesForProperty(int hash,
 String name)
                             throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getTypesForProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

addChild

public Base addChild(String name)
              throws org.hl7.fhir.exceptions.FHIRException

Overrides:

addChild in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

copy

public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent copy()

Specified by:

copy in class BackboneElement

copyValues

public void copyValues(SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent dst)

equalsDeep

public boolean equalsDeep(Base other_)

Overrides:

equalsDeep in class BackboneElement

equalsShallow

public boolean equalsShallow(Base other_)

Overrides:

equalsShallow in class BackboneElement

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface org.hl7.fhir.instance.model.api.IBase

Overrides:

isEmpty in class BackboneElement

fhirType

public String fhirType()

Specified by:

fhirType in interface org.hl7.fhir.instance.model.api.IBase

Overrides:

fhirType in class BackboneElement

Returns:

the FHIR type name of the instance (not the java class name)