
Package org.hl7.fhir.dstu3.model
Class Sequence.SequenceQualityComponent
- java.lang.Object
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- org.hl7.fhir.dstu3.model.Base
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- org.hl7.fhir.dstu3.model.Element
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- org.hl7.fhir.dstu3.model.BackboneElement
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- org.hl7.fhir.dstu3.model.Sequence.SequenceQualityComponent
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- All Implemented Interfaces:
ca.uhn.fhir.model.api.IElement
,Serializable
,org.hl7.fhir.instance.model.api.IBase
,org.hl7.fhir.instance.model.api.IBaseBackboneElement
,org.hl7.fhir.instance.model.api.IBaseElement
,org.hl7.fhir.instance.model.api.IBaseHasExtensions
,org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions
- Enclosing class:
- Sequence
public static class Sequence.SequenceQualityComponent extends BackboneElement implements org.hl7.fhir.instance.model.api.IBaseBackboneElement
- See Also:
- Serialized Form
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Field Summary
Fields Modifier and Type Field Description protected IntegerType
end
End position of the sequence.If the coordinate system is 0-based then end is is exclusive and does not include the last position.protected DecimalType
fScore
Harmonic mean of Recall and Precision, computed as: 2 * precision * recall / (precision + recall).protected DecimalType
gtFP
The number of false positives where the non-REF alleles in the Truth and Query Call Sets match (i.e.protected CodeableConcept
method
Which method is used to get sequence quality.protected DecimalType
precision
QUERY.TP / (QUERY.TP + QUERY.FP).protected DecimalType
queryFP
False positives, i.e.protected DecimalType
queryTP
True positives, from the perspective of the query data, i.e.protected DecimalType
recall
TRUTH.TP / (TRUTH.TP + TRUTH.FN).protected Quantity
score
The score of an experimentally derived feature such as a p-value ([SO:0001685](http://www.sequenceontology.org/browser/current_svn/term/SO:0001685)).protected CodeableConcept
standardSequence
Gold standard sequence used for comparing against.protected IntegerType
start
Start position of the sequence.protected DecimalType
truthFN
False negatives, i.e.protected DecimalType
truthTP
True positives, from the perspective of the truth data, i.e.protected Enumeration<Sequence.QualityType>
type
INDEL / SNP / Undefined variant.-
Fields inherited from class org.hl7.fhir.dstu3.model.BackboneElement
modifierExtension
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Constructor Summary
Constructors Constructor Description SequenceQualityComponent()
ConstructorSequenceQualityComponent(Enumeration<Sequence.QualityType> type)
Constructor
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Method Summary
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Methods inherited from class org.hl7.fhir.dstu3.model.BackboneElement
addModifierExtension, addModifierExtension, copyValues, getModifierExtension, getModifierExtensionFirstRep, hasModifierExtension, setModifierExtension
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Methods inherited from class org.hl7.fhir.dstu3.model.Element
addExtension, addExtension, addExtension, copyValues, getExtension, getExtensionFirstRep, getExtensionsByUrl, getExtensionString, getId, getIdBase, getIdElement, hasExtension, hasExtension, hasId, hasIdElement, setExtension, setId, setIdBase, setIdElement
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Methods inherited from class org.hl7.fhir.dstu3.model.Base
castToAddress, castToAnnotation, castToAttachment, castToBase64Binary, castToBoolean, castToCode, castToCodeableConcept, castToCoding, castToContactDetail, castToContactPoint, castToContributor, castToDataRequirement, castToDate, castToDateTime, castToDecimal, castToDosage, castToDuration, castToElementDefinition, castToExtension, castToHumanName, castToId, castToIdentifier, castToInstant, castToInteger, castToMarkdown, castToMeta, castToMoney, castToNarrative, castToOid, castToParameterDefinition, castToPeriod, castToPositiveInt, castToQuantity, castToRange, castToRatio, castToReference, castToRelatedArtifact, castToResource, castToSampledData, castToSignature, castToSimpleQuantity, castToString, castToTime, castToTiming, castToTriggerDefinition, castToType, castToUnsignedInt, castToUri, castToUsageContext, castToXhtml, castToXhtmlString, children, clearUserData, compareDeep, compareDeep, compareDeep, compareValues, compareValues, equals, getChildByName, getFormatCommentsPost, getFormatCommentsPre, getNamedProperty, getUserData, getUserInt, getUserString, hasFormatComment, hasPrimitiveValue, hasType, hasUserData, isBooleanPrimitive, isMetadataBased, isPrimitive, isResource, listChildrenByName, listChildrenByName, primitiveValue, setUserData, setUserDataINN
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface org.hl7.fhir.instance.model.api.IBase
getFormatCommentsPost, getFormatCommentsPre, getUserData, hasFormatComment, setUserData
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Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseElement
getUserData, setUserData
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Field Detail
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type
protected Enumeration<Sequence.QualityType> type
INDEL / SNP / Undefined variant.
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standardSequence
protected CodeableConcept standardSequence
Gold standard sequence used for comparing against.
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start
protected IntegerType start
Start position of the sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.
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end
protected IntegerType end
End position of the sequence.If the coordinate system is 0-based then end is is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.
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score
protected Quantity score
The score of an experimentally derived feature such as a p-value ([SO:0001685](http://www.sequenceontology.org/browser/current_svn/term/SO:0001685)).
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method
protected CodeableConcept method
Which method is used to get sequence quality.
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truthTP
protected DecimalType truthTP
True positives, from the perspective of the truth data, i.e. the number of sites in the Truth Call Set for which there are paths through the Query Call Set that are consistent with all of the alleles at this site, and for which there is an accurate genotype call for the event.
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queryTP
protected DecimalType queryTP
True positives, from the perspective of the query data, i.e. the number of sites in the Query Call Set for which there are paths through the Truth Call Set that are consistent with all of the alleles at this site, and for which there is an accurate genotype call for the event.
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truthFN
protected DecimalType truthFN
False negatives, i.e. the number of sites in the Truth Call Set for which there is no path through the Query Call Set that is consistent with all of the alleles at this site, or sites for which there is an inaccurate genotype call for the event. Sites with correct variant but incorrect genotype are counted here.
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queryFP
protected DecimalType queryFP
False positives, i.e. the number of sites in the Query Call Set for which there is no path through the Truth Call Set that is consistent with this site. Sites with correct variant but incorrect genotype are counted here.
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gtFP
protected DecimalType gtFP
The number of false positives where the non-REF alleles in the Truth and Query Call Sets match (i.e. cases where the truth is 1/1 and the query is 0/1 or similar).
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precision
protected DecimalType precision
QUERY.TP / (QUERY.TP + QUERY.FP).
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recall
protected DecimalType recall
TRUTH.TP / (TRUTH.TP + TRUTH.FN).
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fScore
protected DecimalType fScore
Harmonic mean of Recall and Precision, computed as: 2 * precision * recall / (precision + recall).
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Constructor Detail
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SequenceQualityComponent
public SequenceQualityComponent()
Constructor
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SequenceQualityComponent
public SequenceQualityComponent(Enumeration<Sequence.QualityType> type)
Constructor
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Method Detail
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getTypeElement
public Enumeration<Sequence.QualityType> getTypeElement()
- Returns:
type
(INDEL / SNP / Undefined variant.). This is the underlying object with id, value and extensions. The accessor "getType" gives direct access to the value
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hasTypeElement
public boolean hasTypeElement()
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hasType
public boolean hasType()
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setTypeElement
public Sequence.SequenceQualityComponent setTypeElement(Enumeration<Sequence.QualityType> value)
- Parameters:
value
-type
(INDEL / SNP / Undefined variant.). This is the underlying object with id, value and extensions. The accessor "getType" gives direct access to the value
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getType
public Sequence.QualityType getType()
- Returns:
- INDEL / SNP / Undefined variant.
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setType
public Sequence.SequenceQualityComponent setType(Sequence.QualityType value)
- Parameters:
value
- INDEL / SNP / Undefined variant.
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getStandardSequence
public CodeableConcept getStandardSequence()
- Returns:
standardSequence
(Gold standard sequence used for comparing against.)
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hasStandardSequence
public boolean hasStandardSequence()
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setStandardSequence
public Sequence.SequenceQualityComponent setStandardSequence(CodeableConcept value)
- Parameters:
value
-standardSequence
(Gold standard sequence used for comparing against.)
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getStartElement
public IntegerType getStartElement()
- Returns:
start
(Start position of the sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.). This is the underlying object with id, value and extensions. The accessor "getStart" gives direct access to the value
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hasStartElement
public boolean hasStartElement()
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hasStart
public boolean hasStart()
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setStartElement
public Sequence.SequenceQualityComponent setStartElement(IntegerType value)
- Parameters:
value
-start
(Start position of the sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.). This is the underlying object with id, value and extensions. The accessor "getStart" gives direct access to the value
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getStart
public int getStart()
- Returns:
- Start position of the sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.
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setStart
public Sequence.SequenceQualityComponent setStart(int value)
- Parameters:
value
- Start position of the sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.
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getEndElement
public IntegerType getEndElement()
- Returns:
end
(End position of the sequence.If the coordinate system is 0-based then end is is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.). This is the underlying object with id, value and extensions. The accessor "getEnd" gives direct access to the value
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hasEndElement
public boolean hasEndElement()
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hasEnd
public boolean hasEnd()
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setEndElement
public Sequence.SequenceQualityComponent setEndElement(IntegerType value)
- Parameters:
value
-end
(End position of the sequence.If the coordinate system is 0-based then end is is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.). This is the underlying object with id, value and extensions. The accessor "getEnd" gives direct access to the value
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getEnd
public int getEnd()
- Returns:
- End position of the sequence.If the coordinate system is 0-based then end is is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.
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setEnd
public Sequence.SequenceQualityComponent setEnd(int value)
- Parameters:
value
- End position of the sequence.If the coordinate system is 0-based then end is is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.
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getScore
public Quantity getScore()
- Returns:
score
(The score of an experimentally derived feature such as a p-value ([SO:0001685](http://www.sequenceontology.org/browser/current_svn/term/SO:0001685)).)
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hasScore
public boolean hasScore()
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setScore
public Sequence.SequenceQualityComponent setScore(Quantity value)
- Parameters:
value
-score
(The score of an experimentally derived feature such as a p-value ([SO:0001685](http://www.sequenceontology.org/browser/current_svn/term/SO:0001685)).)
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getMethod
public CodeableConcept getMethod()
- Returns:
method
(Which method is used to get sequence quality.)
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hasMethod
public boolean hasMethod()
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setMethod
public Sequence.SequenceQualityComponent setMethod(CodeableConcept value)
- Parameters:
value
-method
(Which method is used to get sequence quality.)
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getTruthTPElement
public DecimalType getTruthTPElement()
- Returns:
truthTP
(True positives, from the perspective of the truth data, i.e. the number of sites in the Truth Call Set for which there are paths through the Query Call Set that are consistent with all of the alleles at this site, and for which there is an accurate genotype call for the event.). This is the underlying object with id, value and extensions. The accessor "getTruthTP" gives direct access to the value
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hasTruthTPElement
public boolean hasTruthTPElement()
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hasTruthTP
public boolean hasTruthTP()
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setTruthTPElement
public Sequence.SequenceQualityComponent setTruthTPElement(DecimalType value)
- Parameters:
value
-truthTP
(True positives, from the perspective of the truth data, i.e. the number of sites in the Truth Call Set for which there are paths through the Query Call Set that are consistent with all of the alleles at this site, and for which there is an accurate genotype call for the event.). This is the underlying object with id, value and extensions. The accessor "getTruthTP" gives direct access to the value
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getTruthTP
public BigDecimal getTruthTP()
- Returns:
- True positives, from the perspective of the truth data, i.e. the number of sites in the Truth Call Set for which there are paths through the Query Call Set that are consistent with all of the alleles at this site, and for which there is an accurate genotype call for the event.
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setTruthTP
public Sequence.SequenceQualityComponent setTruthTP(BigDecimal value)
- Parameters:
value
- True positives, from the perspective of the truth data, i.e. the number of sites in the Truth Call Set for which there are paths through the Query Call Set that are consistent with all of the alleles at this site, and for which there is an accurate genotype call for the event.
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setTruthTP
public Sequence.SequenceQualityComponent setTruthTP(long value)
- Parameters:
value
- True positives, from the perspective of the truth data, i.e. the number of sites in the Truth Call Set for which there are paths through the Query Call Set that are consistent with all of the alleles at this site, and for which there is an accurate genotype call for the event.
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setTruthTP
public Sequence.SequenceQualityComponent setTruthTP(double value)
- Parameters:
value
- True positives, from the perspective of the truth data, i.e. the number of sites in the Truth Call Set for which there are paths through the Query Call Set that are consistent with all of the alleles at this site, and for which there is an accurate genotype call for the event.
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getQueryTPElement
public DecimalType getQueryTPElement()
- Returns:
queryTP
(True positives, from the perspective of the query data, i.e. the number of sites in the Query Call Set for which there are paths through the Truth Call Set that are consistent with all of the alleles at this site, and for which there is an accurate genotype call for the event.). This is the underlying object with id, value and extensions. The accessor "getQueryTP" gives direct access to the value
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hasQueryTPElement
public boolean hasQueryTPElement()
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hasQueryTP
public boolean hasQueryTP()
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setQueryTPElement
public Sequence.SequenceQualityComponent setQueryTPElement(DecimalType value)
- Parameters:
value
-queryTP
(True positives, from the perspective of the query data, i.e. the number of sites in the Query Call Set for which there are paths through the Truth Call Set that are consistent with all of the alleles at this site, and for which there is an accurate genotype call for the event.). This is the underlying object with id, value and extensions. The accessor "getQueryTP" gives direct access to the value
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getQueryTP
public BigDecimal getQueryTP()
- Returns:
- True positives, from the perspective of the query data, i.e. the number of sites in the Query Call Set for which there are paths through the Truth Call Set that are consistent with all of the alleles at this site, and for which there is an accurate genotype call for the event.
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setQueryTP
public Sequence.SequenceQualityComponent setQueryTP(BigDecimal value)
- Parameters:
value
- True positives, from the perspective of the query data, i.e. the number of sites in the Query Call Set for which there are paths through the Truth Call Set that are consistent with all of the alleles at this site, and for which there is an accurate genotype call for the event.
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setQueryTP
public Sequence.SequenceQualityComponent setQueryTP(long value)
- Parameters:
value
- True positives, from the perspective of the query data, i.e. the number of sites in the Query Call Set for which there are paths through the Truth Call Set that are consistent with all of the alleles at this site, and for which there is an accurate genotype call for the event.
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setQueryTP
public Sequence.SequenceQualityComponent setQueryTP(double value)
- Parameters:
value
- True positives, from the perspective of the query data, i.e. the number of sites in the Query Call Set for which there are paths through the Truth Call Set that are consistent with all of the alleles at this site, and for which there is an accurate genotype call for the event.
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getTruthFNElement
public DecimalType getTruthFNElement()
- Returns:
truthFN
(False negatives, i.e. the number of sites in the Truth Call Set for which there is no path through the Query Call Set that is consistent with all of the alleles at this site, or sites for which there is an inaccurate genotype call for the event. Sites with correct variant but incorrect genotype are counted here.). This is the underlying object with id, value and extensions. The accessor "getTruthFN" gives direct access to the value
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hasTruthFNElement
public boolean hasTruthFNElement()
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hasTruthFN
public boolean hasTruthFN()
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setTruthFNElement
public Sequence.SequenceQualityComponent setTruthFNElement(DecimalType value)
- Parameters:
value
-truthFN
(False negatives, i.e. the number of sites in the Truth Call Set for which there is no path through the Query Call Set that is consistent with all of the alleles at this site, or sites for which there is an inaccurate genotype call for the event. Sites with correct variant but incorrect genotype are counted here.). This is the underlying object with id, value and extensions. The accessor "getTruthFN" gives direct access to the value
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getTruthFN
public BigDecimal getTruthFN()
- Returns:
- False negatives, i.e. the number of sites in the Truth Call Set for which there is no path through the Query Call Set that is consistent with all of the alleles at this site, or sites for which there is an inaccurate genotype call for the event. Sites with correct variant but incorrect genotype are counted here.
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setTruthFN
public Sequence.SequenceQualityComponent setTruthFN(BigDecimal value)
- Parameters:
value
- False negatives, i.e. the number of sites in the Truth Call Set for which there is no path through the Query Call Set that is consistent with all of the alleles at this site, or sites for which there is an inaccurate genotype call for the event. Sites with correct variant but incorrect genotype are counted here.
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setTruthFN
public Sequence.SequenceQualityComponent setTruthFN(long value)
- Parameters:
value
- False negatives, i.e. the number of sites in the Truth Call Set for which there is no path through the Query Call Set that is consistent with all of the alleles at this site, or sites for which there is an inaccurate genotype call for the event. Sites with correct variant but incorrect genotype are counted here.
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setTruthFN
public Sequence.SequenceQualityComponent setTruthFN(double value)
- Parameters:
value
- False negatives, i.e. the number of sites in the Truth Call Set for which there is no path through the Query Call Set that is consistent with all of the alleles at this site, or sites for which there is an inaccurate genotype call for the event. Sites with correct variant but incorrect genotype are counted here.
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getQueryFPElement
public DecimalType getQueryFPElement()
- Returns:
queryFP
(False positives, i.e. the number of sites in the Query Call Set for which there is no path through the Truth Call Set that is consistent with this site. Sites with correct variant but incorrect genotype are counted here.). This is the underlying object with id, value and extensions. The accessor "getQueryFP" gives direct access to the value
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hasQueryFPElement
public boolean hasQueryFPElement()
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hasQueryFP
public boolean hasQueryFP()
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setQueryFPElement
public Sequence.SequenceQualityComponent setQueryFPElement(DecimalType value)
- Parameters:
value
-queryFP
(False positives, i.e. the number of sites in the Query Call Set for which there is no path through the Truth Call Set that is consistent with this site. Sites with correct variant but incorrect genotype are counted here.). This is the underlying object with id, value and extensions. The accessor "getQueryFP" gives direct access to the value
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getQueryFP
public BigDecimal getQueryFP()
- Returns:
- False positives, i.e. the number of sites in the Query Call Set for which there is no path through the Truth Call Set that is consistent with this site. Sites with correct variant but incorrect genotype are counted here.
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setQueryFP
public Sequence.SequenceQualityComponent setQueryFP(BigDecimal value)
- Parameters:
value
- False positives, i.e. the number of sites in the Query Call Set for which there is no path through the Truth Call Set that is consistent with this site. Sites with correct variant but incorrect genotype are counted here.
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setQueryFP
public Sequence.SequenceQualityComponent setQueryFP(long value)
- Parameters:
value
- False positives, i.e. the number of sites in the Query Call Set for which there is no path through the Truth Call Set that is consistent with this site. Sites with correct variant but incorrect genotype are counted here.
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setQueryFP
public Sequence.SequenceQualityComponent setQueryFP(double value)
- Parameters:
value
- False positives, i.e. the number of sites in the Query Call Set for which there is no path through the Truth Call Set that is consistent with this site. Sites with correct variant but incorrect genotype are counted here.
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getGtFPElement
public DecimalType getGtFPElement()
- Returns:
gtFP
(The number of false positives where the non-REF alleles in the Truth and Query Call Sets match (i.e. cases where the truth is 1/1 and the query is 0/1 or similar).). This is the underlying object with id, value and extensions. The accessor "getGtFP" gives direct access to the value
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hasGtFPElement
public boolean hasGtFPElement()
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hasGtFP
public boolean hasGtFP()
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setGtFPElement
public Sequence.SequenceQualityComponent setGtFPElement(DecimalType value)
- Parameters:
value
-gtFP
(The number of false positives where the non-REF alleles in the Truth and Query Call Sets match (i.e. cases where the truth is 1/1 and the query is 0/1 or similar).). This is the underlying object with id, value and extensions. The accessor "getGtFP" gives direct access to the value
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getGtFP
public BigDecimal getGtFP()
- Returns:
- The number of false positives where the non-REF alleles in the Truth and Query Call Sets match (i.e. cases where the truth is 1/1 and the query is 0/1 or similar).
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setGtFP
public Sequence.SequenceQualityComponent setGtFP(BigDecimal value)
- Parameters:
value
- The number of false positives where the non-REF alleles in the Truth and Query Call Sets match (i.e. cases where the truth is 1/1 and the query is 0/1 or similar).
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setGtFP
public Sequence.SequenceQualityComponent setGtFP(long value)
- Parameters:
value
- The number of false positives where the non-REF alleles in the Truth and Query Call Sets match (i.e. cases where the truth is 1/1 and the query is 0/1 or similar).
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setGtFP
public Sequence.SequenceQualityComponent setGtFP(double value)
- Parameters:
value
- The number of false positives where the non-REF alleles in the Truth and Query Call Sets match (i.e. cases where the truth is 1/1 and the query is 0/1 or similar).
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getPrecisionElement
public DecimalType getPrecisionElement()
- Returns:
precision
(QUERY.TP / (QUERY.TP + QUERY.FP).). This is the underlying object with id, value and extensions. The accessor "getPrecision" gives direct access to the value
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hasPrecisionElement
public boolean hasPrecisionElement()
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hasPrecision
public boolean hasPrecision()
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setPrecisionElement
public Sequence.SequenceQualityComponent setPrecisionElement(DecimalType value)
- Parameters:
value
-precision
(QUERY.TP / (QUERY.TP + QUERY.FP).). This is the underlying object with id, value and extensions. The accessor "getPrecision" gives direct access to the value
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getPrecision
public BigDecimal getPrecision()
- Returns:
- QUERY.TP / (QUERY.TP + QUERY.FP).
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setPrecision
public Sequence.SequenceQualityComponent setPrecision(BigDecimal value)
- Parameters:
value
- QUERY.TP / (QUERY.TP + QUERY.FP).
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setPrecision
public Sequence.SequenceQualityComponent setPrecision(long value)
- Parameters:
value
- QUERY.TP / (QUERY.TP + QUERY.FP).
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setPrecision
public Sequence.SequenceQualityComponent setPrecision(double value)
- Parameters:
value
- QUERY.TP / (QUERY.TP + QUERY.FP).
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getRecallElement
public DecimalType getRecallElement()
- Returns:
recall
(TRUTH.TP / (TRUTH.TP + TRUTH.FN).). This is the underlying object with id, value and extensions. The accessor "getRecall" gives direct access to the value
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hasRecallElement
public boolean hasRecallElement()
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hasRecall
public boolean hasRecall()
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setRecallElement
public Sequence.SequenceQualityComponent setRecallElement(DecimalType value)
- Parameters:
value
-recall
(TRUTH.TP / (TRUTH.TP + TRUTH.FN).). This is the underlying object with id, value and extensions. The accessor "getRecall" gives direct access to the value
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getRecall
public BigDecimal getRecall()
- Returns:
- TRUTH.TP / (TRUTH.TP + TRUTH.FN).
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setRecall
public Sequence.SequenceQualityComponent setRecall(BigDecimal value)
- Parameters:
value
- TRUTH.TP / (TRUTH.TP + TRUTH.FN).
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setRecall
public Sequence.SequenceQualityComponent setRecall(long value)
- Parameters:
value
- TRUTH.TP / (TRUTH.TP + TRUTH.FN).
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setRecall
public Sequence.SequenceQualityComponent setRecall(double value)
- Parameters:
value
- TRUTH.TP / (TRUTH.TP + TRUTH.FN).
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getFScoreElement
public DecimalType getFScoreElement()
- Returns:
fScore
(Harmonic mean of Recall and Precision, computed as: 2 * precision * recall / (precision + recall).). This is the underlying object with id, value and extensions. The accessor "getFScore" gives direct access to the value
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hasFScoreElement
public boolean hasFScoreElement()
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hasFScore
public boolean hasFScore()
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setFScoreElement
public Sequence.SequenceQualityComponent setFScoreElement(DecimalType value)
- Parameters:
value
-fScore
(Harmonic mean of Recall and Precision, computed as: 2 * precision * recall / (precision + recall).). This is the underlying object with id, value and extensions. The accessor "getFScore" gives direct access to the value
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getFScore
public BigDecimal getFScore()
- Returns:
- Harmonic mean of Recall and Precision, computed as: 2 * precision * recall / (precision + recall).
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setFScore
public Sequence.SequenceQualityComponent setFScore(BigDecimal value)
- Parameters:
value
- Harmonic mean of Recall and Precision, computed as: 2 * precision * recall / (precision + recall).
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setFScore
public Sequence.SequenceQualityComponent setFScore(long value)
- Parameters:
value
- Harmonic mean of Recall and Precision, computed as: 2 * precision * recall / (precision + recall).
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setFScore
public Sequence.SequenceQualityComponent setFScore(double value)
- Parameters:
value
- Harmonic mean of Recall and Precision, computed as: 2 * precision * recall / (precision + recall).
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listChildren
protected void listChildren(List<Property> children)
- Overrides:
listChildren
in classBackboneElement
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getNamedProperty
public Property getNamedProperty(int _hash, String _name, boolean _checkValid) throws org.hl7.fhir.exceptions.FHIRException
- Overrides:
getNamedProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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getProperty
public Base[] getProperty(int hash, String name, boolean checkValid) throws org.hl7.fhir.exceptions.FHIRException
- Overrides:
getProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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setProperty
public Base setProperty(int hash, String name, Base value) throws org.hl7.fhir.exceptions.FHIRException
- Overrides:
setProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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setProperty
public Base setProperty(String name, Base value) throws org.hl7.fhir.exceptions.FHIRException
- Overrides:
setProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
-
makeProperty
public Base makeProperty(int hash, String name) throws org.hl7.fhir.exceptions.FHIRException
- Overrides:
makeProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
-
getTypesForProperty
public String[] getTypesForProperty(int hash, String name) throws org.hl7.fhir.exceptions.FHIRException
- Overrides:
getTypesForProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
-
addChild
public Base addChild(String name) throws org.hl7.fhir.exceptions.FHIRException
- Overrides:
addChild
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
-
copy
public Sequence.SequenceQualityComponent copy()
- Specified by:
copy
in classBackboneElement
-
equalsDeep
public boolean equalsDeep(Base other_)
- Overrides:
equalsDeep
in classBackboneElement
-
equalsShallow
public boolean equalsShallow(Base other_)
- Overrides:
equalsShallow
in classBackboneElement
-
isEmpty
public boolean isEmpty()
- Specified by:
isEmpty
in interfaceorg.hl7.fhir.instance.model.api.IBase
- Overrides:
isEmpty
in classBackboneElement
-
fhirType
public String fhirType()
- Specified by:
fhirType
in interfaceorg.hl7.fhir.instance.model.api.IBase
- Overrides:
fhirType
in classBackboneElement
-
-