Class Sequence.SequenceReferenceSeqComponent

  • All Implemented Interfaces:
    ca.uhn.fhir.model.api.IElement, Serializable, org.hl7.fhir.instance.model.api.IBase, org.hl7.fhir.instance.model.api.IBaseBackboneElement, org.hl7.fhir.instance.model.api.IBaseElement, org.hl7.fhir.instance.model.api.IBaseHasExtensions, org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions
    Enclosing class:
    Sequence

    public static class Sequence.SequenceReferenceSeqComponent
    extends BackboneElement
    implements org.hl7.fhir.instance.model.api.IBaseBackboneElement
    See Also:
    Serialized Form
    • Field Detail

      • chromosome

        protected CodeableConcept chromosome
        Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication ([SO:0000340](http://www.sequenceontology.org/browser/current_svn/term/SO:0000340)).
      • genomeBuild

        protected StringType genomeBuild
        The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used.
      • referenceSeqId

        protected CodeableConcept referenceSeqId
        Reference identifier of reference sequence submitted to NCBI. It must match the type in the Sequence.type field. For example, the prefix, ?NG_? identifies reference sequence for genes, ?NM_? for messenger RNA transcripts, and ?NP_? for amino acid sequences.
      • referenceSeqPointerTarget

        protected Sequence referenceSeqPointerTarget
        The actual object that is the target of the reference (A Pointer to another Sequence entity as reference sequence.)
      • strand

        protected IntegerType strand
        Directionality of DNA sequence. Available values are "1" for the plus strand (5' to 3')/Watson/Sense/positive and "-1" for the minus strand(3' to 5')/Crick/Antisense/negative.
      • windowStart

        protected IntegerType windowStart
        Start position of the window on the reference sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.
      • windowEnd

        protected IntegerType windowEnd
        End position of the window on the reference sequence. If the coordinate system is 0-based then end is is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.