Package org.hl7.fhir.r4.model
Class SubstanceProtein.SubstanceProteinSubunitComponent
java.lang.Object
org.hl7.fhir.r4.model.Base
org.hl7.fhir.r4.model.Element
org.hl7.fhir.r4.model.BackboneElement
org.hl7.fhir.r4.model.SubstanceProtein.SubstanceProteinSubunitComponent
- All Implemented Interfaces:
ca.uhn.fhir.model.api.IElement
,Serializable
,org.hl7.fhir.instance.model.api.IBase
,org.hl7.fhir.instance.model.api.IBaseBackboneElement
,org.hl7.fhir.instance.model.api.IBaseElement
,org.hl7.fhir.instance.model.api.IBaseHasExtensions
,org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions
- Enclosing class:
SubstanceProtein
public static class SubstanceProtein.SubstanceProteinSubunitComponent
extends BackboneElement
implements org.hl7.fhir.instance.model.api.IBaseBackboneElement
- See Also:
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Field Summary
Modifier and TypeFieldDescriptionprotected StringType
The modification at the C-terminal shall be specified.protected Identifier
Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.protected IntegerType
Length of linear sequences of amino acids contained in the subunit.protected StringType
The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.protected Identifier
Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.protected StringType
The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes.protected Attachment
The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes.protected IntegerType
Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length.Fields inherited from class org.hl7.fhir.r4.model.BackboneElement
modifierExtension
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Constructor Summary
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Method Summary
Modifier and TypeMethodDescriptioncopy()
void
boolean
equalsDeep
(Base other_) boolean
equalsShallow
(Base other_) fhirType()
int
getNamedProperty
(int _hash, String _name, boolean _checkValid) Base[]
getProperty
(int hash, String name, boolean checkValid) int
String[]
getTypesForProperty
(int hash, String name) boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
isEmpty()
protected void
listChildren
(List<Property> children) makeProperty
(int hash, String name) void
removeChild
(String name, Base value) setCTerminalModification
(String value) setLength
(int value) setLengthElement
(IntegerType value) setNTerminalModification
(String value) setProperty
(int hash, String name, Base value) setProperty
(String name, Base value) setSequence
(String value) setSequenceAttachment
(Attachment value) setSequenceElement
(StringType value) setSubunit
(int value) setSubunitElement
(IntegerType value) Methods inherited from class org.hl7.fhir.r4.model.BackboneElement
addModifierExtension, addModifierExtension, addModifierExtension, checkNoModifiers, copyExtensions, copyNewExtensions, copyValues, getExtensionByUrl, getExtensionsByUrl, getExtensionsByUrl, getModifierExtension, getModifierExtensionFirstRep, hasExtension, hasExtension, hasModifierExtension, removeExtension, setModifierExtension
Methods inherited from class org.hl7.fhir.r4.model.Element
addExtension, addExtension, addExtension, copyExtensions, copyNewExtensions, copyValues, getExtension, getExtensionFirstRep, getExtensionString, getId, getIdBase, getIdElement, hasExtension, hasExtension, hasId, hasIdElement, isDisallowExtensions, noExtensions, setDisallowExtensions, setExtension, setId, setIdBase, setIdElement
Methods inherited from class org.hl7.fhir.r4.model.Base
castToAddress, castToAnnotation, castToAttachment, castToBase64Binary, castToBoolean, castToCanonical, castToCode, castToCodeableConcept, castToCoding, castToContactDetail, castToContactPoint, castToContributor, castToDataRequirement, castToDate, castToDateTime, castToDecimal, castToDosage, castToDuration, castToElementDefinition, castToExpression, castToExtension, castToHumanName, castToId, castToIdentifier, castToInstant, castToInteger, castToMarkdown, castToMarketingStatus, castToMeta, castToMoney, castToNarrative, castToOid, castToParameterDefinition, castToPeriod, castToPopulation, castToPositiveInt, castToProdCharacteristic, castToProductShelfLife, castToQuantity, castToRange, castToRatio, castToReference, castToRelatedArtifact, castToResource, castToSampledData, castToSignature, castToSimpleQuantity, castToString, castToSubstanceAmount, castToTime, castToTiming, castToTriggerDefinition, castToType, castToUnsignedInt, castToUri, castToUrl, castToUsageContext, castToXhtml, castToXhtmlString, children, clearUserData, compareDeep, compareDeep, compareDeep, compareDeep, compareValues, compareValues, copyValues, dateTimeValue, equals, getChildByName, getFormatCommentsPost, getFormatCommentsPre, getNamedProperty, getUserData, getUserInt, getUserString, getXhtml, hasFormatComment, hasPrimitiveValue, hasType, hasUserData, isBooleanPrimitive, isDateTime, isMetadataBased, isPrimitive, isResource, listChildrenByName, listChildrenByName, primitiveValue, setUserData, setUserDataINN
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
Methods inherited from interface org.hl7.fhir.instance.model.api.IBase
getFormatCommentsPost, getFormatCommentsPre, getUserData, hasFormatComment, setUserData
Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseElement
getUserData, setUserData
Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasExtensions
addExtension, getExtension, hasExtension
Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions
addModifierExtension, getModifierExtension, hasModifierExtension
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Field Details
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subunit
Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts. -
sequence
The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence. -
length
Length of linear sequences of amino acids contained in the subunit. -
sequenceAttachment
The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence. -
nTerminalModificationId
Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID. -
nTerminalModification
The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified. -
cTerminalModificationId
Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID. -
cTerminalModification
The modification at the C-terminal shall be specified.
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Constructor Details
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SubstanceProteinSubunitComponent
public SubstanceProteinSubunitComponent()Constructor
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Method Details
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getSubunitElement
- Returns:
subunit
(Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.). This is the underlying object with id, value and extensions. The accessor "getSubunit" gives direct access to the value
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hasSubunitElement
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hasSubunit
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setSubunitElement
- Parameters:
value
-subunit
(Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.). This is the underlying object with id, value and extensions. The accessor "getSubunit" gives direct access to the value
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getSubunit
- Returns:
- Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.
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setSubunit
- Parameters:
value
- Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.
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getSequenceElement
- Returns:
sequence
(The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.). This is the underlying object with id, value and extensions. The accessor "getSequence" gives direct access to the value
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hasSequenceElement
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hasSequence
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setSequenceElement
- Parameters:
value
-sequence
(The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.). This is the underlying object with id, value and extensions. The accessor "getSequence" gives direct access to the value
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getSequence
- Returns:
- The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.
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setSequence
- Parameters:
value
- The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.
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getLengthElement
- Returns:
length
(Length of linear sequences of amino acids contained in the subunit.). This is the underlying object with id, value and extensions. The accessor "getLength" gives direct access to the value
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hasLengthElement
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hasLength
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setLengthElement
- Parameters:
value
-length
(Length of linear sequences of amino acids contained in the subunit.). This is the underlying object with id, value and extensions. The accessor "getLength" gives direct access to the value
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getLength
- Returns:
- Length of linear sequences of amino acids contained in the subunit.
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setLength
- Parameters:
value
- Length of linear sequences of amino acids contained in the subunit.
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getSequenceAttachment
- Returns:
sequenceAttachment
(The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.)
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hasSequenceAttachment
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setSequenceAttachment
- Parameters:
value
-sequenceAttachment
(The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.)
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getNTerminalModificationId
- Returns:
nTerminalModificationId
(Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.)
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hasNTerminalModificationId
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setNTerminalModificationId
public SubstanceProtein.SubstanceProteinSubunitComponent setNTerminalModificationId(Identifier value) - Parameters:
value
-nTerminalModificationId
(Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.)
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getNTerminalModificationElement
- Returns:
nTerminalModification
(The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.). This is the underlying object with id, value and extensions. The accessor "getNTerminalModification" gives direct access to the value
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hasNTerminalModificationElement
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hasNTerminalModification
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setNTerminalModificationElement
public SubstanceProtein.SubstanceProteinSubunitComponent setNTerminalModificationElement(StringType value) - Parameters:
value
-nTerminalModification
(The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.). This is the underlying object with id, value and extensions. The accessor "getNTerminalModification" gives direct access to the value
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getNTerminalModification
- Returns:
- The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.
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setNTerminalModification
- Parameters:
value
- The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.
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getCTerminalModificationId
- Returns:
cTerminalModificationId
(Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.)
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hasCTerminalModificationId
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setCTerminalModificationId
public SubstanceProtein.SubstanceProteinSubunitComponent setCTerminalModificationId(Identifier value) - Parameters:
value
-cTerminalModificationId
(Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.)
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getCTerminalModificationElement
- Returns:
cTerminalModification
(The modification at the C-terminal shall be specified.). This is the underlying object with id, value and extensions. The accessor "getCTerminalModification" gives direct access to the value
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hasCTerminalModificationElement
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hasCTerminalModification
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setCTerminalModificationElement
public SubstanceProtein.SubstanceProteinSubunitComponent setCTerminalModificationElement(StringType value) - Parameters:
value
-cTerminalModification
(The modification at the C-terminal shall be specified.). This is the underlying object with id, value and extensions. The accessor "getCTerminalModification" gives direct access to the value
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getCTerminalModification
- Returns:
- The modification at the C-terminal shall be specified.
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setCTerminalModification
- Parameters:
value
- The modification at the C-terminal shall be specified.
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listChildren
- Overrides:
listChildren
in classBackboneElement
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getNamedProperty
public Property getNamedProperty(int _hash, String _name, boolean _checkValid) throws org.hl7.fhir.exceptions.FHIRException - Overrides:
getNamedProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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getProperty
public Base[] getProperty(int hash, String name, boolean checkValid) throws org.hl7.fhir.exceptions.FHIRException - Overrides:
getProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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setProperty
public Base setProperty(int hash, String name, Base value) throws org.hl7.fhir.exceptions.FHIRException - Overrides:
setProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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setProperty
- Overrides:
setProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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removeChild
- Overrides:
removeChild
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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makeProperty
- Overrides:
makeProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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getTypesForProperty
public String[] getTypesForProperty(int hash, String name) throws org.hl7.fhir.exceptions.FHIRException - Overrides:
getTypesForProperty
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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addChild
- Overrides:
addChild
in classBackboneElement
- Throws:
org.hl7.fhir.exceptions.FHIRException
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copy
- Specified by:
copy
in classBackboneElement
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copyValues
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equalsDeep
- Overrides:
equalsDeep
in classBackboneElement
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equalsShallow
- Overrides:
equalsShallow
in classBackboneElement
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isEmpty
- Specified by:
isEmpty
in interfaceorg.hl7.fhir.instance.model.api.IBase
- Overrides:
isEmpty
in classBackboneElement
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fhirType
- Specified by:
fhirType
in interfaceorg.hl7.fhir.instance.model.api.IBase
- Overrides:
fhirType
in classBackboneElement
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