Package org.hl7.fhir.r4.model

Class SubstanceProtein

java.lang.Object

org.hl7.fhir.r4.model.Base

org.hl7.fhir.r4.model.BaseResource

org.hl7.fhir.r4.model.Resource

org.hl7.fhir.r4.model.DomainResource

org.hl7.fhir.r4.model.SubstanceProtein

All Implemented Interfaces:

ca.uhn.fhir.model.api.IElement, Serializable, org.hl7.fhir.instance.model.api.IAnyResource, org.hl7.fhir.instance.model.api.IBase, org.hl7.fhir.instance.model.api.IBaseHasExtensions, org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions, org.hl7.fhir.instance.model.api.IBaseResource, org.hl7.fhir.instance.model.api.IDomainResource

public class SubstanceProtein
extends DomainResource

A SubstanceProtein is defined as a single unit of a linear amino acid sequence, or a combination of subunits that are either covalently linked or have a defined invariant stoichiometric relationship. This includes all synthetic, recombinant and purified SubstanceProteins of defined sequence, whether the use is therapeutic or prophylactic. This set of elements will be used to describe albumins, coagulation factors, cytokines, growth factors, peptide/SubstanceProtein hormones, enzymes, toxins, toxoids, recombinant vaccines, and immunomodulators.

See Also:

• Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	SubstanceProtein.SubstanceProteinSubunitComponent

Field Summary

Fields

Modifier and Type	Field	Description
protected List<StringType>	disulfideLinkage	The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described.
protected IntegerType	numberOfSubunits	Number of linear sequences of amino acids linked through peptide bonds.
protected CodeableConcept	sequenceType	The SubstanceProtein descriptive elements will only be used when a complete or partial amino acid sequence is available or derivable from a nucleic acid sequence.
protected List<SubstanceProtein.SubstanceProteinSubunitComponent>	subunit	This subclause refers to the description of each subunit constituting the SubstanceProtein.

Fields inherited from class org.hl7.fhir.r4.model.DomainResource

contained, extension, modifierExtension, text

Fields inherited from class org.hl7.fhir.r4.model.Resource

id, implicitRules, language, meta

Fields inherited from interface org.hl7.fhir.instance.model.api.IAnyResource

RES_ID, RES_LAST_UPDATED, RES_PROFILE, RES_SECURITY, RES_TAG, SP_RES_ID, SP_RES_LAST_UPDATED, SP_RES_PROFILE, SP_RES_SECURITY, SP_RES_TAG

Fields inherited from interface org.hl7.fhir.instance.model.api.IBaseResource

INCLUDE_ALL, WILDCARD_ALL_SET

Constructor Summary

Constructors

Constructor	Description
SubstanceProtein()	Constructor

Method Summary

Modifier and Type	Method	Description
Base	addChild(String name)
SubstanceProtein	addDisulfideLinkage(String value)
StringType	addDisulfideLinkageElement()
SubstanceProtein.SubstanceProteinSubunitComponent	addSubunit()
SubstanceProtein	addSubunit(SubstanceProtein.SubstanceProteinSubunitComponent t)
SubstanceProtein	copy()
void	copyValues(SubstanceProtein dst)
boolean	equalsDeep(Base other_)
boolean	equalsShallow(Base other_)
String	fhirType()
List<StringType>	getDisulfideLinkage()
Property	getNamedProperty(int _hash, String _name, boolean _checkValid)
int	getNumberOfSubunits()
IntegerType	getNumberOfSubunitsElement()
Base[]	getProperty(int hash, String name, boolean checkValid)
ResourceType	getResourceType()
CodeableConcept	getSequenceType()
List<SubstanceProtein.SubstanceProteinSubunitComponent>	getSubunit()
SubstanceProtein.SubstanceProteinSubunitComponent	getSubunitFirstRep()
String[]	getTypesForProperty(int hash, String name)
boolean	hasDisulfideLinkage()
boolean	hasDisulfideLinkage(String value)
boolean	hasNumberOfSubunits()
boolean	hasNumberOfSubunitsElement()
boolean	hasSequenceType()
boolean	hasSubunit()
boolean	isEmpty()
protected void	listChildren(List<Property> children)
Base	makeProperty(int hash, String name)
void	removeChild(String name, Base value)
SubstanceProtein	setDisulfideLinkage(List<StringType> theDisulfideLinkage)
SubstanceProtein	setNumberOfSubunits(int value)
SubstanceProtein	setNumberOfSubunitsElement(IntegerType value)
Base	setProperty(int hash, String name, Base value)
Base	setProperty(String name, Base value)
SubstanceProtein	setSequenceType(CodeableConcept value)
SubstanceProtein	setSubunit(List<SubstanceProtein.SubstanceProteinSubunitComponent> theSubunit)
protected SubstanceProtein	typedCopy()

Methods inherited from class org.hl7.fhir.r4.model.DomainResource

addContained, addExtension, addExtension, addExtension, addModifierExtension, addModifierExtension, checkNoModifiers, copyValues, getContained, getContained, getExtension, getExtensionByUrl, getExtensionsByUrl, getModifierExtension, getModifierExtensionsByUrl, getText, hasContained, hasExtension, hasExtension, hasModifierExtension, hasText, setContained, setExtension, setModifierExtension, setText

Methods inherited from class org.hl7.fhir.r4.model.Resource

copyValues, getId, getIdBase, getIdElement, getIdPart, getImplicitRules, getImplicitRulesElement, getLanguage, getLanguage, getLanguageElement, getMeta, hasId, hasIdElement, hasImplicitRules, hasImplicitRulesElement, hasLanguage, hasLanguageElement, hasMeta, setId, setIdBase, setIdElement, setImplicitRules, setImplicitRulesElement, setLanguage, setLanguageElement, setMeta

Methods inherited from class org.hl7.fhir.r4.model.BaseResource

getStructureFhirVersionEnum, isResource, setId

Methods inherited from class org.hl7.fhir.r4.model.Base

castToAddress, castToAnnotation, castToAttachment, castToBase64Binary, castToBoolean, castToCanonical, castToCode, castToCodeableConcept, castToCoding, castToContactDetail, castToContactPoint, castToContributor, castToDataRequirement, castToDate, castToDateTime, castToDecimal, castToDosage, castToDuration, castToElementDefinition, castToExpression, castToExtension, castToHumanName, castToId, castToIdentifier, castToInstant, castToInteger, castToMarkdown, castToMarketingStatus, castToMeta, castToMoney, castToNarrative, castToOid, castToParameterDefinition, castToPeriod, castToPopulation, castToPositiveInt, castToProdCharacteristic, castToProductShelfLife, castToQuantity, castToRange, castToRatio, castToReference, castToRelatedArtifact, castToResource, castToSampledData, castToSignature, castToSimpleQuantity, castToString, castToSubstanceAmount, castToTime, castToTiming, castToTriggerDefinition, castToType, castToUnsignedInt, castToUri, castToUrl, castToUsageContext, castToXhtml, castToXhtmlString, children, clearUserData, compareDeep, compareDeep, compareDeep, compareDeep, compareValues, compareValues, copyValues, dateTimeValue, equals, getChildByName, getFormatCommentsPost, getFormatCommentsPre, getNamedProperty, getUserData, getUserInt, getUserString, getXhtml, hasFormatComment, hasPrimitiveValue, hasType, hasUserData, isBooleanPrimitive, isDateTime, isMetadataBased, isPrimitive, listChildrenByName, listChildrenByName, primitiveValue, setUserData, setUserDataINN

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hl7.fhir.instance.model.api.IAnyResource

getId, getIdElement, getLanguageElement, getUserData, setId, setUserData

Methods inherited from interface org.hl7.fhir.instance.model.api.IBase

getFormatCommentsPost, getFormatCommentsPre, hasFormatComment

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseResource

getMeta, getStructureFhirVersionEnum, isDeleted, setId

Field Details

sequenceType

protected CodeableConcept sequenceType

The SubstanceProtein descriptive elements will only be used when a complete or partial amino acid sequence is available or derivable from a nucleic acid sequence.

numberOfSubunits

protected IntegerType numberOfSubunits

Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable.

disulfideLinkage

protected List<StringType> disulfideLinkage

The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions.

subunit

protected List<SubstanceProtein.SubstanceProteinSubunitComponent> subunit

This subclause refers to the description of each subunit constituting the SubstanceProtein. A subunit is a linear sequence of amino acids linked through peptide bonds. The Subunit information shall be provided when the finished SubstanceProtein is a complex of multiple sequences; subunits are not used to delineate domains within a single sequence. Subunits are listed in order of decreasing length; sequences of the same length will be ordered by decreasing molecular weight; subunits that have identical sequences will be repeated multiple times.

Constructor Details

SubstanceProtein

public SubstanceProtein()

Constructor

Method Details

getSequenceType

public CodeableConcept getSequenceType()

Returns:

sequenceType (The SubstanceProtein descriptive elements will only be used when a complete or partial amino acid sequence is available or derivable from a nucleic acid sequence.)

hasSequenceType

public boolean hasSequenceType()

setSequenceType

public SubstanceProtein setSequenceType(CodeableConcept value)

Parameters:

value - sequenceType (The SubstanceProtein descriptive elements will only be used when a complete or partial amino acid sequence is available or derivable from a nucleic acid sequence.)

getNumberOfSubunitsElement

public IntegerType getNumberOfSubunitsElement()

Returns:

numberOfSubunits (Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable.). This is the underlying object with id, value and extensions. The accessor "getNumberOfSubunits" gives direct access to the value

hasNumberOfSubunitsElement

public boolean hasNumberOfSubunitsElement()

hasNumberOfSubunits

public boolean hasNumberOfSubunits()

setNumberOfSubunitsElement

public SubstanceProtein setNumberOfSubunitsElement(IntegerType value)

Parameters:

value - numberOfSubunits (Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable.). This is the underlying object with id, value and extensions. The accessor "getNumberOfSubunits" gives direct access to the value

getNumberOfSubunits

public int getNumberOfSubunits()

Returns:

Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable.

setNumberOfSubunits

public SubstanceProtein setNumberOfSubunits(int value)

Parameters:

value - Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable.

getDisulfideLinkage

public List<StringType> getDisulfideLinkage()

Returns:

disulfideLinkage (The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions.)

setDisulfideLinkage

public SubstanceProtein setDisulfideLinkage(List<StringType> theDisulfideLinkage)

Returns:

Returns a reference to this for easy method chaining

hasDisulfideLinkage

public boolean hasDisulfideLinkage()

addDisulfideLinkageElement

public StringType addDisulfideLinkageElement()

Returns:

disulfideLinkage (The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions.)

addDisulfideLinkage

public SubstanceProtein addDisulfideLinkage(String value)

Parameters:

value - disulfideLinkage (The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions.)

hasDisulfideLinkage

public boolean hasDisulfideLinkage(String value)

Parameters:

value - disulfideLinkage (The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions.)

getSubunit

public List<SubstanceProtein.SubstanceProteinSubunitComponent> getSubunit()

Returns:

subunit (This subclause refers to the description of each subunit constituting the SubstanceProtein. A subunit is a linear sequence of amino acids linked through peptide bonds. The Subunit information shall be provided when the finished SubstanceProtein is a complex of multiple sequences; subunits are not used to delineate domains within a single sequence. Subunits are listed in order of decreasing length; sequences of the same length will be ordered by decreasing molecular weight; subunits that have identical sequences will be repeated multiple times.)

setSubunit

public SubstanceProtein setSubunit(List<SubstanceProtein.SubstanceProteinSubunitComponent> theSubunit)

Returns:

Returns a reference to this for easy method chaining

hasSubunit

public boolean hasSubunit()

addSubunit

public SubstanceProtein.SubstanceProteinSubunitComponent addSubunit()

addSubunit

public SubstanceProtein addSubunit(SubstanceProtein.SubstanceProteinSubunitComponent t)

getSubunitFirstRep

public SubstanceProtein.SubstanceProteinSubunitComponent getSubunitFirstRep()

Returns:

The first repetition of repeating field subunit, creating it if it does not already exist

listChildren

protected void listChildren(List<Property> children)

Overrides:

listChildren in class DomainResource

getNamedProperty

public Property getNamedProperty(int _hash,
 String _name,
 boolean _checkValid)
                          throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getNamedProperty in class DomainResource

Throws:

org.hl7.fhir.exceptions.FHIRException

getProperty

public Base[] getProperty(int hash,
 String name,
 boolean checkValid)
                   throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getProperty in class DomainResource

Throws:

org.hl7.fhir.exceptions.FHIRException

setProperty

public Base setProperty(int hash,
 String name,
 Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

setProperty in class DomainResource

Throws:

org.hl7.fhir.exceptions.FHIRException

setProperty

public Base setProperty(String name,
 Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

setProperty in class DomainResource

Throws:

org.hl7.fhir.exceptions.FHIRException

removeChild

public void removeChild(String name,
 Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

removeChild in class DomainResource

Throws:

org.hl7.fhir.exceptions.FHIRException

makeProperty

public Base makeProperty(int hash,
 String name)
                  throws org.hl7.fhir.exceptions.FHIRException

Overrides:

makeProperty in class DomainResource

Throws:

org.hl7.fhir.exceptions.FHIRException

getTypesForProperty

public String[] getTypesForProperty(int hash,
 String name)
                             throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getTypesForProperty in class DomainResource

Throws:

org.hl7.fhir.exceptions.FHIRException

addChild

public Base addChild(String name)
              throws org.hl7.fhir.exceptions.FHIRException

Overrides:

addChild in class DomainResource

Throws:

org.hl7.fhir.exceptions.FHIRException

fhirType

public String fhirType()

Specified by:

fhirType in interface org.hl7.fhir.instance.model.api.IBase

Overrides:

fhirType in class DomainResource

copy

public SubstanceProtein copy()

Specified by:

copy in class DomainResource

copyValues

public void copyValues(SubstanceProtein dst)

typedCopy

protected SubstanceProtein typedCopy()

equalsDeep

public boolean equalsDeep(Base other_)

Overrides:

equalsDeep in class DomainResource

equalsShallow

public boolean equalsShallow(Base other_)

Overrides:

equalsShallow in class DomainResource

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface org.hl7.fhir.instance.model.api.IBase

Overrides:

isEmpty in class DomainResource

getResourceType

public ResourceType getResourceType()

Specified by:

getResourceType in class Resource