Class MolecularSequence.MolecularSequenceRelativeEditComponent

java.lang.Object
org.hl7.fhir.r5.model.Base
org.hl7.fhir.r5.model.Element
org.hl7.fhir.r5.model.BackboneElement
org.hl7.fhir.r5.model.MolecularSequence.MolecularSequenceRelativeEditComponent
All Implemented Interfaces:
ca.uhn.fhir.model.api.IElement, Serializable, org.hl7.fhir.instance.model.api.IBase, org.hl7.fhir.instance.model.api.IBaseBackboneElement, org.hl7.fhir.instance.model.api.IBaseElement, org.hl7.fhir.instance.model.api.IBaseHasExtensions, org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions
Enclosing class:
MolecularSequence

public static class MolecularSequence.MolecularSequenceRelativeEditComponent extends BackboneElement implements org.hl7.fhir.instance.model.api.IBaseBackboneElement
See Also:
  • Field Details

    • start

      protected IntegerType start
      Start position of the edit on the starting sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.
    • end

      protected IntegerType end
      End position of the edit on the starting sequence. If the coordinate system is 0-based then end is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.
    • replacementSequence

      Allele that was observed. Nucleotide(s)/amino acids from start position of sequence to stop position of sequence on the positive (+) strand of the observed sequence. When the sequence type is DNA, it should be the sequence on the positive (+) strand. This will lay in the range between variant.start and variant.end.
    • replacedSequence

      Allele in the starting sequence. Nucleotide(s)/amino acids from start position of sequence to stop position of sequence on the positive (+) strand of the starting sequence. When the sequence type is DNA, it should be the sequence on the positive (+) strand. This will lay in the range between variant.start and variant.end.
  • Constructor Details

  • Method Details

    • getStartElement

      Returns:
      start (Start position of the edit on the starting sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.). This is the underlying object with id, value and extensions. The accessor "getStart" gives direct access to the value
    • hasStartElement

      public boolean hasStartElement()
    • hasStart

      public boolean hasStart()
    • setStartElement

      Parameters:
      value - start (Start position of the edit on the starting sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.). This is the underlying object with id, value and extensions. The accessor "getStart" gives direct access to the value
    • getStart

      public int getStart()
      Returns:
      Start position of the edit on the starting sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.
    • setStart

      Parameters:
      value - Start position of the edit on the starting sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.
    • getEndElement

      Returns:
      end (End position of the edit on the starting sequence. If the coordinate system is 0-based then end is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.). This is the underlying object with id, value and extensions. The accessor "getEnd" gives direct access to the value
    • hasEndElement

      public boolean hasEndElement()
    • hasEnd

      public boolean hasEnd()
    • setEndElement

      Parameters:
      value - end (End position of the edit on the starting sequence. If the coordinate system is 0-based then end is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.). This is the underlying object with id, value and extensions. The accessor "getEnd" gives direct access to the value
    • getEnd

      public int getEnd()
      Returns:
      End position of the edit on the starting sequence. If the coordinate system is 0-based then end is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.
    • setEnd

      Parameters:
      value - End position of the edit on the starting sequence. If the coordinate system is 0-based then end is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.
    • getReplacementSequenceElement

      Returns:
      replacementSequence (Allele that was observed. Nucleotide(s)/amino acids from start position of sequence to stop position of sequence on the positive (+) strand of the observed sequence. When the sequence type is DNA, it should be the sequence on the positive (+) strand. This will lay in the range between variant.start and variant.end.). This is the underlying object with id, value and extensions. The accessor "getReplacementSequence" gives direct access to the value
    • hasReplacementSequenceElement

    • hasReplacementSequence

      public boolean hasReplacementSequence()
    • setReplacementSequenceElement

      Parameters:
      value - replacementSequence (Allele that was observed. Nucleotide(s)/amino acids from start position of sequence to stop position of sequence on the positive (+) strand of the observed sequence. When the sequence type is DNA, it should be the sequence on the positive (+) strand. This will lay in the range between variant.start and variant.end.). This is the underlying object with id, value and extensions. The accessor "getReplacementSequence" gives direct access to the value
    • getReplacementSequence

      Returns:
      Allele that was observed. Nucleotide(s)/amino acids from start position of sequence to stop position of sequence on the positive (+) strand of the observed sequence. When the sequence type is DNA, it should be the sequence on the positive (+) strand. This will lay in the range between variant.start and variant.end.
    • setReplacementSequence

      Parameters:
      value - Allele that was observed. Nucleotide(s)/amino acids from start position of sequence to stop position of sequence on the positive (+) strand of the observed sequence. When the sequence type is DNA, it should be the sequence on the positive (+) strand. This will lay in the range between variant.start and variant.end.
    • getReplacedSequenceElement

      Returns:
      replacedSequence (Allele in the starting sequence. Nucleotide(s)/amino acids from start position of sequence to stop position of sequence on the positive (+) strand of the starting sequence. When the sequence type is DNA, it should be the sequence on the positive (+) strand. This will lay in the range between variant.start and variant.end.). This is the underlying object with id, value and extensions. The accessor "getReplacedSequence" gives direct access to the value
    • hasReplacedSequenceElement

      public boolean hasReplacedSequenceElement()
    • hasReplacedSequence

      public boolean hasReplacedSequence()
    • setReplacedSequenceElement

      Parameters:
      value - replacedSequence (Allele in the starting sequence. Nucleotide(s)/amino acids from start position of sequence to stop position of sequence on the positive (+) strand of the starting sequence. When the sequence type is DNA, it should be the sequence on the positive (+) strand. This will lay in the range between variant.start and variant.end.). This is the underlying object with id, value and extensions. The accessor "getReplacedSequence" gives direct access to the value
    • getReplacedSequence

      Returns:
      Allele in the starting sequence. Nucleotide(s)/amino acids from start position of sequence to stop position of sequence on the positive (+) strand of the starting sequence. When the sequence type is DNA, it should be the sequence on the positive (+) strand. This will lay in the range between variant.start and variant.end.
    • setReplacedSequence

      Parameters:
      value - Allele in the starting sequence. Nucleotide(s)/amino acids from start position of sequence to stop position of sequence on the positive (+) strand of the starting sequence. When the sequence type is DNA, it should be the sequence on the positive (+) strand. This will lay in the range between variant.start and variant.end.
    • listChildren

      protected void listChildren(List<Property> children)
      Overrides:
      listChildren in class BackboneElement
    • getNamedProperty

      public Property getNamedProperty(int _hash, String _name, boolean _checkValid) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      getNamedProperty in class BackboneElement
      Throws:
      org.hl7.fhir.exceptions.FHIRException
    • getProperty

      public Base[] getProperty(int hash, String name, boolean checkValid) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      getProperty in class BackboneElement
      Throws:
      org.hl7.fhir.exceptions.FHIRException
    • setProperty

      public Base setProperty(int hash, String name, Base value) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      setProperty in class BackboneElement
      Throws:
      org.hl7.fhir.exceptions.FHIRException
    • setProperty

      public Base setProperty(String name, Base value) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      setProperty in class BackboneElement
      Throws:
      org.hl7.fhir.exceptions.FHIRException
    • removeChild

      public void removeChild(String name, Base value) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      removeChild in class BackboneElement
      Throws:
      org.hl7.fhir.exceptions.FHIRException
    • makeProperty

      public Base makeProperty(int hash, String name) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      makeProperty in class BackboneElement
      Throws:
      org.hl7.fhir.exceptions.FHIRException
    • getTypesForProperty

      public String[] getTypesForProperty(int hash, String name) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      getTypesForProperty in class BackboneElement
      Throws:
      org.hl7.fhir.exceptions.FHIRException
    • addChild

      public Base addChild(String name) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      addChild in class BackboneElement
      Throws:
      org.hl7.fhir.exceptions.FHIRException
    • copy

      Specified by:
      copy in class BackboneElement
    • copyValues

    • equalsDeep

      public boolean equalsDeep(Base other_)
      Overrides:
      equalsDeep in class BackboneElement
    • equalsShallow

      public boolean equalsShallow(Base other_)
      Overrides:
      equalsShallow in class BackboneElement
    • isEmpty

      public boolean isEmpty()
      Specified by:
      isEmpty in interface org.hl7.fhir.instance.model.api.IBase
      Overrides:
      isEmpty in class BackboneElement
    • fhirType

      public String fhirType()
      Specified by:
      fhirType in interface org.hl7.fhir.instance.model.api.IBase
      Overrides:
      fhirType in class BackboneElement
      Returns:
      the FHIR type name of the instance (not the java class name)