Class MolecularSequence
- All Implemented Interfaces:
ca.uhn.fhir.model.api.IElement
,Serializable
,org.hl7.fhir.instance.model.api.IAnyResource
,org.hl7.fhir.instance.model.api.IBase
,org.hl7.fhir.instance.model.api.IBaseHasExtensions
,org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions
,org.hl7.fhir.instance.model.api.IBaseResource
,org.hl7.fhir.instance.model.api.IDomainResource
- See Also:
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Nested Class Summary
Modifier and TypeClassDescriptionstatic class
static class
static class
static enum
static class
static enum
static class
static enum
static class
Nested classes/interfaces inherited from class org.hl7.fhir.r5.model.Base
Base.ProfileSource, Base.ValidationInfo, Base.ValidationMode, Base.ValidationReason
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Field Summary
Modifier and TypeFieldDescriptionprotected Reference
The method for sequencing, for example, chip information.The actual focus of a molecular sequence when it is not the patient of record representing something or someone associated with the patient such as a spouse, parent, child, or sibling.static final ca.uhn.fhir.rest.gclient.ReferenceClientParam
Fluent Client search parameter constant for focusprotected List
<Attachment> Sequence that was observed as file content.protected List
<Identifier> A unique identifier for this particular sequence instance.static final ca.uhn.fhir.rest.gclient.TokenClientParam
Fluent Client search parameter constant for identifierstatic final ca.uhn.fhir.model.api.Include
Constant for fluent queries to be used to add include statements.static final ca.uhn.fhir.model.api.Include
Constant for fluent queries to be used to add include statements.static final ca.uhn.fhir.model.api.Include
Constant for fluent queries to be used to add include statements.protected StringType
Sequence that was observed.static final ca.uhn.fhir.rest.gclient.ReferenceClientParam
Fluent Client search parameter constant for patientprotected Reference
The organization or lab that should be responsible for this result.A sequence defined relative to another sequence.static final String
Search parameter: focusstatic final String
Search parameter: identifierstatic final String
Search parameter: patientstatic final String
Search parameter: subjectstatic final String
Search parameter: typeprotected Reference
Specimen used for sequencing.protected Reference
Indicates the subject this sequence is associated too.static final ca.uhn.fhir.rest.gclient.ReferenceClientParam
Fluent Client search parameter constant for subjectprotected Enumeration
<MolecularSequence.SequenceType> Amino Acid Sequence/ DNA Sequence / RNA Sequence.static final ca.uhn.fhir.rest.gclient.TokenClientParam
Fluent Client search parameter constant for typeFields inherited from class org.hl7.fhir.r5.model.DomainResource
contained, extension, modifierExtension, SP_TEXT, text, TEXT
Fields inherited from class org.hl7.fhir.r5.model.Resource
id, implicitRules, language, meta
Fields inherited from interface org.hl7.fhir.instance.model.api.IAnyResource
RES_ID, RES_LAST_UPDATED, RES_PROFILE, RES_SECURITY, RES_TAG, SP_RES_ID, SP_RES_LAST_UPDATED, SP_RES_PROFILE, SP_RES_SECURITY, SP_RES_TAG
Fields inherited from interface org.hl7.fhir.instance.model.api.IBaseResource
INCLUDE_ALL, WILDCARD_ALL_SET
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Constructor Summary
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Method Summary
Modifier and TypeMethodDescriptionaddFocus()
copy()
void
boolean
equalsDeep
(Base other_) boolean
equalsShallow
(Base other_) fhirType()
getFocus()
getNamedProperty
(int _hash, String _name, boolean _checkValid) Base[]
getProperty
(int hash, String name, boolean checkValid) getType()
String[]
getTypesForProperty
(int hash, String name) boolean
boolean
hasFocus()
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
hasType()
boolean
boolean
isEmpty()
protected void
listChildren
(List<Property> children) makeProperty
(int hash, String name) void
removeChild
(String name, Base value) setFormatted
(List<Attachment> theFormatted) setIdentifier
(List<Identifier> theIdentifier) setLiteral
(String value) setLiteralElement
(StringType value) setPerformer
(Reference value) setProperty
(int hash, String name, Base value) setProperty
(String name, Base value) setSpecimen
(Reference value) setSubject
(Reference value) protected MolecularSequence
Methods inherited from class org.hl7.fhir.r5.model.DomainResource
addContained, addExtension, addExtension, addExtension, addModifierExtension, addModifierExtension, checkNoModifiers, copyValues, getContained, getContained, getExtension, getExtensionByUrl, getExtensionsByUrl, getExtensionsByUrl, getModifierExtension, getModifierExtensionsByUrl, getStandardsStatus, getText, hasContained, hasExtension, hasExtension, hasExtension, hasModifierExtension, hasText, setContained, setExtension, setModifierExtension, setStandardsStatus, setText
Methods inherited from class org.hl7.fhir.r5.model.Resource
copyValues, getFHIRPublicationVersion, getId, getIdBase, getIdElement, getIdPart, getImplicitRules, getImplicitRulesElement, getLanguage, getLanguage, getLanguageElement, getMeta, getSourcePackage, getWebPath, hasId, hasIdElement, hasImplicitRules, hasImplicitRulesElement, hasLanguage, hasLanguageElement, hasMeta, hasSourcePackage, hasWebPath, setId, setIdBase, setIdElement, setImplicitRules, setImplicitRulesElement, setLanguage, setLanguageElement, setMeta, setSourcePackage, setWebPath
Methods inherited from class org.hl7.fhir.r5.model.BaseResource
getStructureFhirVersionEnum, isResource, setId
Methods inherited from class org.hl7.fhir.r5.model.Base
addDefinition, addFormatCommentsPost, addFormatCommentsPre, addValidationMessage, canHavePrimitiveValue, children, clearUserData, compareDeep, compareDeep, compareDeep, compareDeep, compareValues, compareValues, copyFormatComments, copyUserData, copyValues, dateTimeValue, equals, getChildByName, getChildValueByName, getFormatCommentsPost, getFormatCommentsPre, getNamedProperty, getUserData, getUserInt, getUserString, getValidationInfo, getValidationMessages, getXhtml, hasFormatComment, hasFormatCommentPost, hasFormatCommentPre, hasPrimitiveValue, hasType, hasUserData, hasValidated, hasValidationInfo, hasValidationMessages, isBooleanPrimitive, isCopyUserData, isDateTime, isMetadataBased, isPrimitive, listChildrenByName, listChildrenByName, primitiveValue, setCopyUserData, setUserData, setUserDataINN
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
Methods inherited from interface org.hl7.fhir.instance.model.api.IAnyResource
getId, getIdElement, getLanguageElement, getUserData, setId, setUserData
Methods inherited from interface org.hl7.fhir.instance.model.api.IBase
getFormatCommentsPost, getFormatCommentsPre, hasFormatComment
Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseResource
getMeta, getStructureFhirVersionEnum, isDeleted, setId
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Field Details
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identifier
A unique identifier for this particular sequence instance. -
type
Amino Acid Sequence/ DNA Sequence / RNA Sequence. -
subject
Indicates the subject this sequence is associated too. -
focus
The actual focus of a molecular sequence when it is not the patient of record representing something or someone associated with the patient such as a spouse, parent, child, or sibling. For example, in trio testing, the subject would be the child (proband) and the focus would be the parent. -
specimen
Specimen used for sequencing. -
device
The method for sequencing, for example, chip information. -
performer
The organization or lab that should be responsible for this result. -
literal
Sequence that was observed. -
formatted
Sequence that was observed as file content. Can be an actual file contents, or referenced by a URL to an external system. -
relative
A sequence defined relative to another sequence. -
SP_FOCUS
Search parameter: focusDescription: What the molecular sequence is about, when it is not about the subject of record
Type: reference
Path: MolecularSequence.focus
- See Also:
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FOCUS
Fluent Client search parameter constant for focusDescription: What the molecular sequence is about, when it is not about the subject of record
Type: reference
Path: MolecularSequence.focus
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INCLUDE_FOCUS
Constant for fluent queries to be used to add include statements. Specifies the path value of "MolecularSequence:focus". -
SP_SUBJECT
Search parameter: subjectDescription: The subject that the sequence is about
Type: reference
Path: MolecularSequence.subject
- See Also:
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SUBJECT
Fluent Client search parameter constant for subjectDescription: The subject that the sequence is about
Type: reference
Path: MolecularSequence.subject
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INCLUDE_SUBJECT
Constant for fluent queries to be used to add include statements. Specifies the path value of "MolecularSequence:subject". -
SP_IDENTIFIER
Search parameter: identifierDescription: Multiple Resources: [Account](account.html): Account number [AdverseEvent](adverseevent.html): Business identifier for the event [AllergyIntolerance](allergyintolerance.html): External ids for this item [Appointment](appointment.html): An Identifier of the Appointment [AppointmentResponse](appointmentresponse.html): An Identifier in this appointment response [Basic](basic.html): Business identifier [BodyStructure](bodystructure.html): Bodystructure identifier [CarePlan](careplan.html): External Ids for this plan [CareTeam](careteam.html): External Ids for this team [ChargeItem](chargeitem.html): Business Identifier for item [Claim](claim.html): The primary identifier of the financial resource [ClaimResponse](claimresponse.html): The identity of the ClaimResponse [ClinicalImpression](clinicalimpression.html): Business identifier [Communication](communication.html): Unique identifier [CommunicationRequest](communicationrequest.html): Unique identifier [Composition](composition.html): Version-independent identifier for the Composition [Condition](condition.html): A unique identifier of the condition record [Consent](consent.html): Identifier for this record (external references) [Contract](contract.html): The identity of the contract [Coverage](coverage.html): The primary identifier of the insured and the coverage [CoverageEligibilityRequest](coverageeligibilityrequest.html): The business identifier of the Eligibility [CoverageEligibilityResponse](coverageeligibilityresponse.html): The business identifier [DetectedIssue](detectedissue.html): Unique id for the detected issue [DeviceRequest](devicerequest.html): Business identifier for request/order [DeviceUsage](deviceusage.html): Search by identifier [DiagnosticReport](diagnosticreport.html): An identifier for the report [DocumentReference](documentreference.html): Identifier of the attachment binary [Encounter](encounter.html): Identifier(s) by which this encounter is known [EnrollmentRequest](enrollmentrequest.html): The business identifier of the Enrollment [EpisodeOfCare](episodeofcare.html): Business Identifier(s) relevant for this EpisodeOfCare [ExplanationOfBenefit](explanationofbenefit.html): The business identifier of the Explanation of Benefit [FamilyMemberHistory](familymemberhistory.html): A search by a record identifier [Flag](flag.html): Business identifier [Goal](goal.html): External Ids for this goal [GuidanceResponse](guidanceresponse.html): The identifier of the guidance response [ImagingSelection](imagingselection.html): Identifiers for the imaging selection [ImagingStudy](imagingstudy.html): Identifiers for the Study, such as DICOM Study Instance UID [Immunization](immunization.html): Business identifier [ImmunizationEvaluation](immunizationevaluation.html): ID of the evaluation [ImmunizationRecommendation](immunizationrecommendation.html): Business identifier [Invoice](invoice.html): Business Identifier for item [List](list.html): Business identifier [MeasureReport](measurereport.html): External identifier of the measure report to be returned [Medication](medication.html): Returns medications with this external identifier [MedicationAdministration](medicationadministration.html): Return administrations with this external identifier [MedicationDispense](medicationdispense.html): Returns dispenses with this external identifier [MedicationRequest](medicationrequest.html): Return prescriptions with this external identifier [MedicationStatement](medicationstatement.html): Return statements with this external identifier [MolecularSequence](molecularsequence.html): The unique identity for a particular sequence [NutritionIntake](nutritionintake.html): Return statements with this external identifier [NutritionOrder](nutritionorder.html): Return nutrition orders with this external identifier [Observation](observation.html): The unique id for a particular observation [Person](person.html): A person Identifier [Procedure](procedure.html): A unique identifier for a procedure [QuestionnaireResponse](questionnaireresponse.html): The unique identifier for the questionnaire response [RelatedPerson](relatedperson.html): An Identifier of the RelatedPerson [RequestOrchestration](requestorchestration.html): External identifiers for the request orchestration [ResearchSubject](researchsubject.html): Business Identifier for research subject in a study [RiskAssessment](riskassessment.html): Unique identifier for the assessment [ServiceRequest](servicerequest.html): Identifiers assigned to this order [Specimen](specimen.html): The unique identifier associated with the specimen [SupplyDelivery](supplydelivery.html): External identifier [SupplyRequest](supplyrequest.html): Business Identifier for SupplyRequest [Task](task.html): Search for a task instance by its business identifier [VisionPrescription](visionprescription.html): Return prescriptions with this external identifier
Type: token
Path: Account.identifier | AdverseEvent.identifier | AllergyIntolerance.identifier | Appointment.identifier | AppointmentResponse.identifier | Basic.identifier | BodyStructure.identifier | CarePlan.identifier | CareTeam.identifier | ChargeItem.identifier | Claim.identifier | ClaimResponse.identifier | ClinicalImpression.identifier | Communication.identifier | CommunicationRequest.identifier | Composition.identifier | Condition.identifier | Consent.identifier | Contract.identifier | Coverage.identifier | CoverageEligibilityRequest.identifier | CoverageEligibilityResponse.identifier | DetectedIssue.identifier | DeviceRequest.identifier | DeviceUsage.identifier | DiagnosticReport.identifier | DocumentReference.identifier | Encounter.identifier | EnrollmentRequest.identifier | EpisodeOfCare.identifier | ExplanationOfBenefit.identifier | FamilyMemberHistory.identifier | Flag.identifier | Goal.identifier | GuidanceResponse.identifier | ImagingSelection.identifier | ImagingStudy.identifier | Immunization.identifier | ImmunizationEvaluation.identifier | ImmunizationRecommendation.identifier | Invoice.identifier | List.identifier | MeasureReport.identifier | Medication.identifier | MedicationAdministration.identifier | MedicationDispense.identifier | MedicationRequest.identifier | MedicationStatement.identifier | MolecularSequence.identifier | NutritionIntake.identifier | NutritionOrder.identifier | Observation.identifier | Person.identifier | Procedure.identifier | QuestionnaireResponse.identifier | RelatedPerson.identifier | RequestOrchestration.identifier | ResearchSubject.identifier | RiskAssessment.identifier | ServiceRequest.identifier | Specimen.identifier | SupplyDelivery.identifier | SupplyRequest.identifier | Task.identifier | VisionPrescription.identifier
- See Also:
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IDENTIFIER
Fluent Client search parameter constant for identifierDescription: Multiple Resources: [Account](account.html): Account number [AdverseEvent](adverseevent.html): Business identifier for the event [AllergyIntolerance](allergyintolerance.html): External ids for this item [Appointment](appointment.html): An Identifier of the Appointment [AppointmentResponse](appointmentresponse.html): An Identifier in this appointment response [Basic](basic.html): Business identifier [BodyStructure](bodystructure.html): Bodystructure identifier [CarePlan](careplan.html): External Ids for this plan [CareTeam](careteam.html): External Ids for this team [ChargeItem](chargeitem.html): Business Identifier for item [Claim](claim.html): The primary identifier of the financial resource [ClaimResponse](claimresponse.html): The identity of the ClaimResponse [ClinicalImpression](clinicalimpression.html): Business identifier [Communication](communication.html): Unique identifier [CommunicationRequest](communicationrequest.html): Unique identifier [Composition](composition.html): Version-independent identifier for the Composition [Condition](condition.html): A unique identifier of the condition record [Consent](consent.html): Identifier for this record (external references) [Contract](contract.html): The identity of the contract [Coverage](coverage.html): The primary identifier of the insured and the coverage [CoverageEligibilityRequest](coverageeligibilityrequest.html): The business identifier of the Eligibility [CoverageEligibilityResponse](coverageeligibilityresponse.html): The business identifier [DetectedIssue](detectedissue.html): Unique id for the detected issue [DeviceRequest](devicerequest.html): Business identifier for request/order [DeviceUsage](deviceusage.html): Search by identifier [DiagnosticReport](diagnosticreport.html): An identifier for the report [DocumentReference](documentreference.html): Identifier of the attachment binary [Encounter](encounter.html): Identifier(s) by which this encounter is known [EnrollmentRequest](enrollmentrequest.html): The business identifier of the Enrollment [EpisodeOfCare](episodeofcare.html): Business Identifier(s) relevant for this EpisodeOfCare [ExplanationOfBenefit](explanationofbenefit.html): The business identifier of the Explanation of Benefit [FamilyMemberHistory](familymemberhistory.html): A search by a record identifier [Flag](flag.html): Business identifier [Goal](goal.html): External Ids for this goal [GuidanceResponse](guidanceresponse.html): The identifier of the guidance response [ImagingSelection](imagingselection.html): Identifiers for the imaging selection [ImagingStudy](imagingstudy.html): Identifiers for the Study, such as DICOM Study Instance UID [Immunization](immunization.html): Business identifier [ImmunizationEvaluation](immunizationevaluation.html): ID of the evaluation [ImmunizationRecommendation](immunizationrecommendation.html): Business identifier [Invoice](invoice.html): Business Identifier for item [List](list.html): Business identifier [MeasureReport](measurereport.html): External identifier of the measure report to be returned [Medication](medication.html): Returns medications with this external identifier [MedicationAdministration](medicationadministration.html): Return administrations with this external identifier [MedicationDispense](medicationdispense.html): Returns dispenses with this external identifier [MedicationRequest](medicationrequest.html): Return prescriptions with this external identifier [MedicationStatement](medicationstatement.html): Return statements with this external identifier [MolecularSequence](molecularsequence.html): The unique identity for a particular sequence [NutritionIntake](nutritionintake.html): Return statements with this external identifier [NutritionOrder](nutritionorder.html): Return nutrition orders with this external identifier [Observation](observation.html): The unique id for a particular observation [Person](person.html): A person Identifier [Procedure](procedure.html): A unique identifier for a procedure [QuestionnaireResponse](questionnaireresponse.html): The unique identifier for the questionnaire response [RelatedPerson](relatedperson.html): An Identifier of the RelatedPerson [RequestOrchestration](requestorchestration.html): External identifiers for the request orchestration [ResearchSubject](researchsubject.html): Business Identifier for research subject in a study [RiskAssessment](riskassessment.html): Unique identifier for the assessment [ServiceRequest](servicerequest.html): Identifiers assigned to this order [Specimen](specimen.html): The unique identifier associated with the specimen [SupplyDelivery](supplydelivery.html): External identifier [SupplyRequest](supplyrequest.html): Business Identifier for SupplyRequest [Task](task.html): Search for a task instance by its business identifier [VisionPrescription](visionprescription.html): Return prescriptions with this external identifier
Type: token
Path: Account.identifier | AdverseEvent.identifier | AllergyIntolerance.identifier | Appointment.identifier | AppointmentResponse.identifier | Basic.identifier | BodyStructure.identifier | CarePlan.identifier | CareTeam.identifier | ChargeItem.identifier | Claim.identifier | ClaimResponse.identifier | ClinicalImpression.identifier | Communication.identifier | CommunicationRequest.identifier | Composition.identifier | Condition.identifier | Consent.identifier | Contract.identifier | Coverage.identifier | CoverageEligibilityRequest.identifier | CoverageEligibilityResponse.identifier | DetectedIssue.identifier | DeviceRequest.identifier | DeviceUsage.identifier | DiagnosticReport.identifier | DocumentReference.identifier | Encounter.identifier | EnrollmentRequest.identifier | EpisodeOfCare.identifier | ExplanationOfBenefit.identifier | FamilyMemberHistory.identifier | Flag.identifier | Goal.identifier | GuidanceResponse.identifier | ImagingSelection.identifier | ImagingStudy.identifier | Immunization.identifier | ImmunizationEvaluation.identifier | ImmunizationRecommendation.identifier | Invoice.identifier | List.identifier | MeasureReport.identifier | Medication.identifier | MedicationAdministration.identifier | MedicationDispense.identifier | MedicationRequest.identifier | MedicationStatement.identifier | MolecularSequence.identifier | NutritionIntake.identifier | NutritionOrder.identifier | Observation.identifier | Person.identifier | Procedure.identifier | QuestionnaireResponse.identifier | RelatedPerson.identifier | RequestOrchestration.identifier | ResearchSubject.identifier | RiskAssessment.identifier | ServiceRequest.identifier | Specimen.identifier | SupplyDelivery.identifier | SupplyRequest.identifier | Task.identifier | VisionPrescription.identifier
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SP_PATIENT
Search parameter: patientDescription: Multiple Resources: [Account](account.html): The entity that caused the expenses [AdverseEvent](adverseevent.html): Subject impacted by event [AllergyIntolerance](allergyintolerance.html): Who the sensitivity is for [Appointment](appointment.html): One of the individuals of the appointment is this patient [AppointmentResponse](appointmentresponse.html): This Response is for this Patient [AuditEvent](auditevent.html): Where the activity involved patient data [Basic](basic.html): Identifies the focus of this resource [BodyStructure](bodystructure.html): Who this is about [CarePlan](careplan.html): Who the care plan is for [CareTeam](careteam.html): Who care team is for [ChargeItem](chargeitem.html): Individual service was done for/to [Claim](claim.html): Patient receiving the products or services [ClaimResponse](claimresponse.html): The subject of care [ClinicalImpression](clinicalimpression.html): Patient assessed [Communication](communication.html): Focus of message [CommunicationRequest](communicationrequest.html): Focus of message [Composition](composition.html): Who and/or what the composition is about [Condition](condition.html): Who has the condition? [Consent](consent.html): Who the consent applies to [Contract](contract.html): The identity of the subject of the contract (if a patient) [Coverage](coverage.html): Retrieve coverages for a patient [CoverageEligibilityRequest](coverageeligibilityrequest.html): The reference to the patient [CoverageEligibilityResponse](coverageeligibilityresponse.html): The reference to the patient [DetectedIssue](detectedissue.html): Associated patient [DeviceRequest](devicerequest.html): Individual the service is ordered for [DeviceUsage](deviceusage.html): Search by patient who used / uses the device [DiagnosticReport](diagnosticreport.html): The subject of the report if a patient [DocumentReference](documentreference.html): Who/what is the subject of the document [Encounter](encounter.html): The patient present at the encounter [EnrollmentRequest](enrollmentrequest.html): The party to be enrolled [EpisodeOfCare](episodeofcare.html): The patient who is the focus of this episode of care [ExplanationOfBenefit](explanationofbenefit.html): The reference to the patient [FamilyMemberHistory](familymemberhistory.html): The identity of a subject to list family member history items for [Flag](flag.html): The identity of a subject to list flags for [Goal](goal.html): Who this goal is intended for [GuidanceResponse](guidanceresponse.html): The identity of a patient to search for guidance response results [ImagingSelection](imagingselection.html): Who the study is about [ImagingStudy](imagingstudy.html): Who the study is about [Immunization](immunization.html): The patient for the vaccination record [ImmunizationEvaluation](immunizationevaluation.html): The patient being evaluated [ImmunizationRecommendation](immunizationrecommendation.html): Who this profile is for [Invoice](invoice.html): Recipient(s) of goods and services [List](list.html): If all resources have the same subject [MeasureReport](measurereport.html): The identity of a patient to search for individual measure report results for [MedicationAdministration](medicationadministration.html): The identity of a patient to list administrations for [MedicationDispense](medicationdispense.html): The identity of a patient to list dispenses for [MedicationRequest](medicationrequest.html): Returns prescriptions for a specific patient [MedicationStatement](medicationstatement.html): Returns statements for a specific patient. [MolecularSequence](molecularsequence.html): The subject that the sequence is about [NutritionIntake](nutritionintake.html): Returns statements for a specific patient. [NutritionOrder](nutritionorder.html): The identity of the individual or set of individuals who requires the diet, formula or nutritional supplement [Observation](observation.html): The subject that the observation is about (if patient) [Person](person.html): The Person links to this Patient [Procedure](procedure.html): Search by subject - a patient [Provenance](provenance.html): Where the activity involved patient data [QuestionnaireResponse](questionnaireresponse.html): The patient that is the subject of the questionnaire response [RelatedPerson](relatedperson.html): The patient this related person is related to [RequestOrchestration](requestorchestration.html): The identity of a patient to search for request orchestrations [ResearchSubject](researchsubject.html): Who or what is part of study [RiskAssessment](riskassessment.html): Who/what does assessment apply to? [ServiceRequest](servicerequest.html): Search by subject - a patient [Specimen](specimen.html): The patient the specimen comes from [SupplyDelivery](supplydelivery.html): Patient for whom the item is supplied [SupplyRequest](supplyrequest.html): The patient or subject for whom the supply is destined [Task](task.html): Search by patient [VisionPrescription](visionprescription.html): The identity of a patient to list dispenses for
Type: reference
Path: Account.subject.where(resolve() is Patient) | AdverseEvent.subject.where(resolve() is Patient) | AllergyIntolerance.patient | Appointment.participant.actor.where(resolve() is Patient) | Appointment.subject.where(resolve() is Patient) | AppointmentResponse.actor.where(resolve() is Patient) | AuditEvent.patient | Basic.subject.where(resolve() is Patient) | BodyStructure.patient | CarePlan.subject.where(resolve() is Patient) | CareTeam.subject.where(resolve() is Patient) | ChargeItem.subject.where(resolve() is Patient) | Claim.patient | ClaimResponse.patient | ClinicalImpression.subject.where(resolve() is Patient) | Communication.subject.where(resolve() is Patient) | CommunicationRequest.subject.where(resolve() is Patient) | Composition.subject.where(resolve() is Patient) | Condition.subject.where(resolve() is Patient) | Consent.subject.where(resolve() is Patient) | Contract.subject.where(resolve() is Patient) | Coverage.beneficiary | CoverageEligibilityRequest.patient | CoverageEligibilityResponse.patient | DetectedIssue.subject.where(resolve() is Patient) | DeviceRequest.subject.where(resolve() is Patient) | DeviceUsage.patient | DiagnosticReport.subject.where(resolve() is Patient) | DocumentReference.subject.where(resolve() is Patient) | Encounter.subject.where(resolve() is Patient) | EnrollmentRequest.candidate | EpisodeOfCare.patient | ExplanationOfBenefit.patient | FamilyMemberHistory.patient | Flag.subject.where(resolve() is Patient) | Goal.subject.where(resolve() is Patient) | GuidanceResponse.subject.where(resolve() is Patient) | ImagingSelection.subject.where(resolve() is Patient) | ImagingStudy.subject.where(resolve() is Patient) | Immunization.patient | ImmunizationEvaluation.patient | ImmunizationRecommendation.patient | Invoice.subject.where(resolve() is Patient) | List.subject.where(resolve() is Patient) | MeasureReport.subject.where(resolve() is Patient) | MedicationAdministration.subject.where(resolve() is Patient) | MedicationDispense.subject.where(resolve() is Patient) | MedicationRequest.subject.where(resolve() is Patient) | MedicationStatement.subject.where(resolve() is Patient) | MolecularSequence.subject.where(resolve() is Patient) | NutritionIntake.subject.where(resolve() is Patient) | NutritionOrder.subject.where(resolve() is Patient) | Observation.subject.where(resolve() is Patient) | Person.link.target.where(resolve() is Patient) | Procedure.subject.where(resolve() is Patient) | Provenance.patient | QuestionnaireResponse.subject.where(resolve() is Patient) | RelatedPerson.patient | RequestOrchestration.subject.where(resolve() is Patient) | ResearchSubject.subject.where(resolve() is Patient) | RiskAssessment.subject.where(resolve() is Patient) | ServiceRequest.subject.where(resolve() is Patient) | Specimen.subject.where(resolve() is Patient) | SupplyDelivery.patient | SupplyRequest.deliverFor | Task.for.where(resolve() is Patient) | VisionPrescription.patient
- See Also:
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PATIENT
Fluent Client search parameter constant for patientDescription: Multiple Resources: [Account](account.html): The entity that caused the expenses [AdverseEvent](adverseevent.html): Subject impacted by event [AllergyIntolerance](allergyintolerance.html): Who the sensitivity is for [Appointment](appointment.html): One of the individuals of the appointment is this patient [AppointmentResponse](appointmentresponse.html): This Response is for this Patient [AuditEvent](auditevent.html): Where the activity involved patient data [Basic](basic.html): Identifies the focus of this resource [BodyStructure](bodystructure.html): Who this is about [CarePlan](careplan.html): Who the care plan is for [CareTeam](careteam.html): Who care team is for [ChargeItem](chargeitem.html): Individual service was done for/to [Claim](claim.html): Patient receiving the products or services [ClaimResponse](claimresponse.html): The subject of care [ClinicalImpression](clinicalimpression.html): Patient assessed [Communication](communication.html): Focus of message [CommunicationRequest](communicationrequest.html): Focus of message [Composition](composition.html): Who and/or what the composition is about [Condition](condition.html): Who has the condition? [Consent](consent.html): Who the consent applies to [Contract](contract.html): The identity of the subject of the contract (if a patient) [Coverage](coverage.html): Retrieve coverages for a patient [CoverageEligibilityRequest](coverageeligibilityrequest.html): The reference to the patient [CoverageEligibilityResponse](coverageeligibilityresponse.html): The reference to the patient [DetectedIssue](detectedissue.html): Associated patient [DeviceRequest](devicerequest.html): Individual the service is ordered for [DeviceUsage](deviceusage.html): Search by patient who used / uses the device [DiagnosticReport](diagnosticreport.html): The subject of the report if a patient [DocumentReference](documentreference.html): Who/what is the subject of the document [Encounter](encounter.html): The patient present at the encounter [EnrollmentRequest](enrollmentrequest.html): The party to be enrolled [EpisodeOfCare](episodeofcare.html): The patient who is the focus of this episode of care [ExplanationOfBenefit](explanationofbenefit.html): The reference to the patient [FamilyMemberHistory](familymemberhistory.html): The identity of a subject to list family member history items for [Flag](flag.html): The identity of a subject to list flags for [Goal](goal.html): Who this goal is intended for [GuidanceResponse](guidanceresponse.html): The identity of a patient to search for guidance response results [ImagingSelection](imagingselection.html): Who the study is about [ImagingStudy](imagingstudy.html): Who the study is about [Immunization](immunization.html): The patient for the vaccination record [ImmunizationEvaluation](immunizationevaluation.html): The patient being evaluated [ImmunizationRecommendation](immunizationrecommendation.html): Who this profile is for [Invoice](invoice.html): Recipient(s) of goods and services [List](list.html): If all resources have the same subject [MeasureReport](measurereport.html): The identity of a patient to search for individual measure report results for [MedicationAdministration](medicationadministration.html): The identity of a patient to list administrations for [MedicationDispense](medicationdispense.html): The identity of a patient to list dispenses for [MedicationRequest](medicationrequest.html): Returns prescriptions for a specific patient [MedicationStatement](medicationstatement.html): Returns statements for a specific patient. [MolecularSequence](molecularsequence.html): The subject that the sequence is about [NutritionIntake](nutritionintake.html): Returns statements for a specific patient. [NutritionOrder](nutritionorder.html): The identity of the individual or set of individuals who requires the diet, formula or nutritional supplement [Observation](observation.html): The subject that the observation is about (if patient) [Person](person.html): The Person links to this Patient [Procedure](procedure.html): Search by subject - a patient [Provenance](provenance.html): Where the activity involved patient data [QuestionnaireResponse](questionnaireresponse.html): The patient that is the subject of the questionnaire response [RelatedPerson](relatedperson.html): The patient this related person is related to [RequestOrchestration](requestorchestration.html): The identity of a patient to search for request orchestrations [ResearchSubject](researchsubject.html): Who or what is part of study [RiskAssessment](riskassessment.html): Who/what does assessment apply to? [ServiceRequest](servicerequest.html): Search by subject - a patient [Specimen](specimen.html): The patient the specimen comes from [SupplyDelivery](supplydelivery.html): Patient for whom the item is supplied [SupplyRequest](supplyrequest.html): The patient or subject for whom the supply is destined [Task](task.html): Search by patient [VisionPrescription](visionprescription.html): The identity of a patient to list dispenses for
Type: reference
Path: Account.subject.where(resolve() is Patient) | AdverseEvent.subject.where(resolve() is Patient) | AllergyIntolerance.patient | Appointment.participant.actor.where(resolve() is Patient) | Appointment.subject.where(resolve() is Patient) | AppointmentResponse.actor.where(resolve() is Patient) | AuditEvent.patient | Basic.subject.where(resolve() is Patient) | BodyStructure.patient | CarePlan.subject.where(resolve() is Patient) | CareTeam.subject.where(resolve() is Patient) | ChargeItem.subject.where(resolve() is Patient) | Claim.patient | ClaimResponse.patient | ClinicalImpression.subject.where(resolve() is Patient) | Communication.subject.where(resolve() is Patient) | CommunicationRequest.subject.where(resolve() is Patient) | Composition.subject.where(resolve() is Patient) | Condition.subject.where(resolve() is Patient) | Consent.subject.where(resolve() is Patient) | Contract.subject.where(resolve() is Patient) | Coverage.beneficiary | CoverageEligibilityRequest.patient | CoverageEligibilityResponse.patient | DetectedIssue.subject.where(resolve() is Patient) | DeviceRequest.subject.where(resolve() is Patient) | DeviceUsage.patient | DiagnosticReport.subject.where(resolve() is Patient) | DocumentReference.subject.where(resolve() is Patient) | Encounter.subject.where(resolve() is Patient) | EnrollmentRequest.candidate | EpisodeOfCare.patient | ExplanationOfBenefit.patient | FamilyMemberHistory.patient | Flag.subject.where(resolve() is Patient) | Goal.subject.where(resolve() is Patient) | GuidanceResponse.subject.where(resolve() is Patient) | ImagingSelection.subject.where(resolve() is Patient) | ImagingStudy.subject.where(resolve() is Patient) | Immunization.patient | ImmunizationEvaluation.patient | ImmunizationRecommendation.patient | Invoice.subject.where(resolve() is Patient) | List.subject.where(resolve() is Patient) | MeasureReport.subject.where(resolve() is Patient) | MedicationAdministration.subject.where(resolve() is Patient) | MedicationDispense.subject.where(resolve() is Patient) | MedicationRequest.subject.where(resolve() is Patient) | MedicationStatement.subject.where(resolve() is Patient) | MolecularSequence.subject.where(resolve() is Patient) | NutritionIntake.subject.where(resolve() is Patient) | NutritionOrder.subject.where(resolve() is Patient) | Observation.subject.where(resolve() is Patient) | Person.link.target.where(resolve() is Patient) | Procedure.subject.where(resolve() is Patient) | Provenance.patient | QuestionnaireResponse.subject.where(resolve() is Patient) | RelatedPerson.patient | RequestOrchestration.subject.where(resolve() is Patient) | ResearchSubject.subject.where(resolve() is Patient) | RiskAssessment.subject.where(resolve() is Patient) | ServiceRequest.subject.where(resolve() is Patient) | Specimen.subject.where(resolve() is Patient) | SupplyDelivery.patient | SupplyRequest.deliverFor | Task.for.where(resolve() is Patient) | VisionPrescription.patient
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INCLUDE_PATIENT
Constant for fluent queries to be used to add include statements. Specifies the path value of "MolecularSequence:patient". -
SP_TYPE
Search parameter: typeDescription: Multiple Resources: [Account](account.html): E.g. patient, expense, depreciation [AllergyIntolerance](allergyintolerance.html): allergy | intolerance - Underlying mechanism (if known) [Composition](composition.html): Kind of composition (LOINC if possible) [Coverage](coverage.html): The kind of coverage (health plan, auto, Workers Compensation) [DocumentReference](documentreference.html): Kind of document (LOINC if possible) [Encounter](encounter.html): Specific type of encounter [EpisodeOfCare](episodeofcare.html): Type/class - e.g. specialist referral, disease management [Invoice](invoice.html): Type of Invoice [MedicationDispense](medicationdispense.html): Returns dispenses of a specific type [MolecularSequence](molecularsequence.html): Amino Acid Sequence/ DNA Sequence / RNA Sequence [Specimen](specimen.html): The specimen type
Type: token
Path: Account.type | AllergyIntolerance.type | Composition.type | Coverage.type | DocumentReference.type | Encounter.type | EpisodeOfCare.type | Invoice.type | MedicationDispense.type | MolecularSequence.type | Specimen.type
- See Also:
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TYPE
Fluent Client search parameter constant for typeDescription: Multiple Resources: [Account](account.html): E.g. patient, expense, depreciation [AllergyIntolerance](allergyintolerance.html): allergy | intolerance - Underlying mechanism (if known) [Composition](composition.html): Kind of composition (LOINC if possible) [Coverage](coverage.html): The kind of coverage (health plan, auto, Workers Compensation) [DocumentReference](documentreference.html): Kind of document (LOINC if possible) [Encounter](encounter.html): Specific type of encounter [EpisodeOfCare](episodeofcare.html): Type/class - e.g. specialist referral, disease management [Invoice](invoice.html): Type of Invoice [MedicationDispense](medicationdispense.html): Returns dispenses of a specific type [MolecularSequence](molecularsequence.html): Amino Acid Sequence/ DNA Sequence / RNA Sequence [Specimen](specimen.html): The specimen type
Type: token
Path: Account.type | AllergyIntolerance.type | Composition.type | Coverage.type | DocumentReference.type | Encounter.type | EpisodeOfCare.type | Invoice.type | MedicationDispense.type | MolecularSequence.type | Specimen.type
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Constructor Details
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MolecularSequence
public MolecularSequence()Constructor
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Method Details
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getIdentifier
- Returns:
identifier
(A unique identifier for this particular sequence instance.)
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setIdentifier
- Returns:
- Returns a reference to
this
for easy method chaining
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hasIdentifier
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addIdentifier
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addIdentifier
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getIdentifierFirstRep
- Returns:
- The first repetition of repeating field
identifier
, creating it if it does not already exist {3}
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getTypeElement
- Returns:
type
(Amino Acid Sequence/ DNA Sequence / RNA Sequence.). This is the underlying object with id, value and extensions. The accessor "getType" gives direct access to the value
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hasTypeElement
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hasType
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setTypeElement
- Parameters:
value
-type
(Amino Acid Sequence/ DNA Sequence / RNA Sequence.). This is the underlying object with id, value and extensions. The accessor "getType" gives direct access to the value
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getType
- Returns:
- Amino Acid Sequence/ DNA Sequence / RNA Sequence.
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setType
- Parameters:
value
- Amino Acid Sequence/ DNA Sequence / RNA Sequence.
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getSubject
- Returns:
subject
(Indicates the subject this sequence is associated too.)
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hasSubject
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setSubject
- Parameters:
value
-subject
(Indicates the subject this sequence is associated too.)
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getFocus
- Returns:
focus
(The actual focus of a molecular sequence when it is not the patient of record representing something or someone associated with the patient such as a spouse, parent, child, or sibling. For example, in trio testing, the subject would be the child (proband) and the focus would be the parent.)
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setFocus
- Returns:
- Returns a reference to
this
for easy method chaining
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hasFocus
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addFocus
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addFocus
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getFocusFirstRep
- Returns:
- The first repetition of repeating field
focus
, creating it if it does not already exist {3}
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getSpecimen
- Returns:
specimen
(Specimen used for sequencing.)
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hasSpecimen
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setSpecimen
- Parameters:
value
-specimen
(Specimen used for sequencing.)
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getDevice
- Returns:
device
(The method for sequencing, for example, chip information.)
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hasDevice
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setDevice
- Parameters:
value
-device
(The method for sequencing, for example, chip information.)
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getPerformer
- Returns:
performer
(The organization or lab that should be responsible for this result.)
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hasPerformer
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setPerformer
- Parameters:
value
-performer
(The organization or lab that should be responsible for this result.)
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getLiteralElement
- Returns:
literal
(Sequence that was observed.). This is the underlying object with id, value and extensions. The accessor "getLiteral" gives direct access to the value
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hasLiteralElement
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hasLiteral
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setLiteralElement
- Parameters:
value
-literal
(Sequence that was observed.). This is the underlying object with id, value and extensions. The accessor "getLiteral" gives direct access to the value
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getLiteral
- Returns:
- Sequence that was observed.
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setLiteral
- Parameters:
value
- Sequence that was observed.
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getFormatted
- Returns:
formatted
(Sequence that was observed as file content. Can be an actual file contents, or referenced by a URL to an external system.)
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setFormatted
- Returns:
- Returns a reference to
this
for easy method chaining
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hasFormatted
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addFormatted
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addFormatted
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getFormattedFirstRep
- Returns:
- The first repetition of repeating field
formatted
, creating it if it does not already exist {3}
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getRelative
- Returns:
relative
(A sequence defined relative to another sequence.)
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setRelative
public MolecularSequence setRelative(List<MolecularSequence.MolecularSequenceRelativeComponent> theRelative) - Returns:
- Returns a reference to
this
for easy method chaining
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hasRelative
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addRelative
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addRelative
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getRelativeFirstRep
- Returns:
- The first repetition of repeating field
relative
, creating it if it does not already exist {3}
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listChildren
- Overrides:
listChildren
in classDomainResource
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getNamedProperty
public Property getNamedProperty(int _hash, String _name, boolean _checkValid) throws org.hl7.fhir.exceptions.FHIRException - Overrides:
getNamedProperty
in classDomainResource
- Throws:
org.hl7.fhir.exceptions.FHIRException
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getProperty
public Base[] getProperty(int hash, String name, boolean checkValid) throws org.hl7.fhir.exceptions.FHIRException - Overrides:
getProperty
in classDomainResource
- Throws:
org.hl7.fhir.exceptions.FHIRException
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setProperty
public Base setProperty(int hash, String name, Base value) throws org.hl7.fhir.exceptions.FHIRException - Overrides:
setProperty
in classDomainResource
- Throws:
org.hl7.fhir.exceptions.FHIRException
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setProperty
- Overrides:
setProperty
in classDomainResource
- Throws:
org.hl7.fhir.exceptions.FHIRException
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removeChild
- Overrides:
removeChild
in classDomainResource
- Throws:
org.hl7.fhir.exceptions.FHIRException
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makeProperty
- Overrides:
makeProperty
in classDomainResource
- Throws:
org.hl7.fhir.exceptions.FHIRException
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getTypesForProperty
public String[] getTypesForProperty(int hash, String name) throws org.hl7.fhir.exceptions.FHIRException - Overrides:
getTypesForProperty
in classDomainResource
- Throws:
org.hl7.fhir.exceptions.FHIRException
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addChild
- Overrides:
addChild
in classDomainResource
- Throws:
org.hl7.fhir.exceptions.FHIRException
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fhirType
- Specified by:
fhirType
in interfaceorg.hl7.fhir.instance.model.api.IBase
- Overrides:
fhirType
in classDomainResource
- Returns:
- the FHIR type name of the instance (not the java class name)
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copy
- Specified by:
copy
in classDomainResource
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copyValues
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typedCopy
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equalsDeep
- Overrides:
equalsDeep
in classDomainResource
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equalsShallow
- Overrides:
equalsShallow
in classDomainResource
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isEmpty
- Specified by:
isEmpty
in interfaceorg.hl7.fhir.instance.model.api.IBase
- Overrides:
isEmpty
in classDomainResource
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getResourceType
- Specified by:
getResourceType
in classResource
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