Package org.hl7.fhir.r5.model

Class MolecularSequence.MolecularSequenceRelativeComponent

java.lang.Object

org.hl7.fhir.r5.model.Base

org.hl7.fhir.r5.model.Element

org.hl7.fhir.r5.model.BackboneElement

org.hl7.fhir.r5.model.MolecularSequence.MolecularSequenceRelativeComponent

All Implemented Interfaces:

ca.uhn.fhir.model.api.IElement, Serializable, org.hl7.fhir.instance.model.api.IBase, org.hl7.fhir.instance.model.api.IBaseBackboneElement, org.hl7.fhir.instance.model.api.IBaseElement, org.hl7.fhir.instance.model.api.IBaseHasExtensions, org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions

Enclosing class:

MolecularSequence

public static class MolecularSequence.MolecularSequenceRelativeComponent
extends BackboneElement
implements org.hl7.fhir.instance.model.api.IBaseBackboneElement

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class org.hl7.fhir.r5.model.Base

Base.ProfileSource, Base.ValidationInfo, Base.ValidationMode, Base.ValidationReason

Field Summary

Fields

Modifier and Type	Field	Description
protected CodeableConcept	coordinateSystem	These are different ways of identifying nucleotides or amino acids within a sequence.
protected List<MolecularSequence.MolecularSequenceRelativeEditComponent>	edit	Changes in sequence from the starting sequence.
protected IntegerType	ordinalPosition	Indicates the order in which the sequence should be considered when putting multiple 'relative' elements together.
protected Range	sequenceRange	Indicates the nucleotide range in the composed sequence when multiple 'relative' elements are used together.
protected MolecularSequence.MolecularSequenceRelativeStartingSequenceComponent	startingSequence	A sequence that is used as a starting sequence to describe variants that are present in a sequence analyzed.

Fields inherited from class org.hl7.fhir.r5.model.BackboneElement

modifierExtension

Fields inherited from class org.hl7.fhir.r5.model.Element

extension, id

Constructor Summary

Constructors

Constructor	Description
MolecularSequenceRelativeComponent()	Constructor
MolecularSequenceRelativeComponent(CodeableConcept coordinateSystem)	Constructor

Method Summary

Modifier and Type	Method	Description
Base	addChild(String name)
MolecularSequence.MolecularSequenceRelativeEditComponent	addEdit()
MolecularSequence.MolecularSequenceRelativeComponent	addEdit(MolecularSequence.MolecularSequenceRelativeEditComponent t)
MolecularSequence.MolecularSequenceRelativeComponent	copy()
void	copyValues(MolecularSequence.MolecularSequenceRelativeComponent dst)
boolean	equalsDeep(Base other_)
boolean	equalsShallow(Base other_)
String	fhirType()
CodeableConcept	getCoordinateSystem()
List<MolecularSequence.MolecularSequenceRelativeEditComponent>	getEdit()
MolecularSequence.MolecularSequenceRelativeEditComponent	getEditFirstRep()
Property	getNamedProperty(int _hash, String _name, boolean _checkValid)
int	getOrdinalPosition()
IntegerType	getOrdinalPositionElement()
Base[]	getProperty(int hash, String name, boolean checkValid)
Range	getSequenceRange()
MolecularSequence.MolecularSequenceRelativeStartingSequenceComponent	getStartingSequence()
String[]	getTypesForProperty(int hash, String name)
boolean	hasCoordinateSystem()
boolean	hasEdit()
boolean	hasOrdinalPosition()
boolean	hasOrdinalPositionElement()
boolean	hasSequenceRange()
boolean	hasStartingSequence()
boolean	isEmpty()
protected void	listChildren(List<Property> children)
Base	makeProperty(int hash, String name)
void	removeChild(String name, Base value)
MolecularSequence.MolecularSequenceRelativeComponent	setCoordinateSystem(CodeableConcept value)
MolecularSequence.MolecularSequenceRelativeComponent	setEdit(List<MolecularSequence.MolecularSequenceRelativeEditComponent> theEdit)
MolecularSequence.MolecularSequenceRelativeComponent	setOrdinalPosition(int value)
MolecularSequence.MolecularSequenceRelativeComponent	setOrdinalPositionElement(IntegerType value)
Base	setProperty(int hash, String name, Base value)
Base	setProperty(String name, Base value)
MolecularSequence.MolecularSequenceRelativeComponent	setSequenceRange(Range value)
MolecularSequence.MolecularSequenceRelativeComponent	setStartingSequence(MolecularSequence.MolecularSequenceRelativeStartingSequenceComponent value)

Methods inherited from class org.hl7.fhir.r5.model.BackboneElement

addModifierExtension, addModifierExtension, addModifierExtension, checkNoModifiers, copyExtensions, copyNewExtensions, copyValues, getExtensionByUrl, getExtensionsByUrl, getExtensionsByUrl, getModifierExtension, getModifierExtensionFirstRep, hasExtension, hasExtension, hasModifierExtension, removeExtension, setModifierExtension

Methods inherited from class org.hl7.fhir.r5.model.Element

addExtension, addExtension, addExtension, copyExtensions, copyNewExtensions, copyValues, getExtension, getExtensionFirstRep, getExtensionString, getExtensionString, getFHIRPublicationVersion, getId, getIdBase, getIdElement, getStandardsStatus, hasExtension, hasExtension, hasId, hasIdElement, isDisallowExtensions, noExtensions, setDisallowExtensions, setExtension, setId, setIdBase, setIdElement, setStandardsStatus

Methods inherited from class org.hl7.fhir.r5.model.Base

addDefinition, addFormatCommentsPost, addFormatCommentsPre, addValidationMessage, canHavePrimitiveValue, children, clearUserData, compareDeep, compareDeep, compareDeep, compareDeep, compareValues, compareValues, copyFormatComments, copyUserData, copyValues, dateTimeValue, equals, getChildByName, getChildValueByName, getFormatCommentsPost, getFormatCommentsPre, getNamedProperty, getUserData, getUserInt, getUserString, getValidationInfo, getValidationMessages, getXhtml, hasFormatComment, hasFormatCommentPost, hasFormatCommentPre, hasPrimitiveValue, hasType, hasUserData, hasValidated, hasValidationInfo, hasValidationMessages, isBooleanPrimitive, isCopyUserData, isDateTime, isMetadataBased, isPrimitive, isResource, listChildrenByName, listChildrenByName, primitiveValue, setCopyUserData, setUserData, setUserDataINN

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hl7.fhir.instance.model.api.IBase

getFormatCommentsPost, getFormatCommentsPre, getUserData, hasFormatComment, setUserData

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseElement

getUserData, setUserData

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasExtensions

addExtension, getExtension, hasExtension

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions

addModifierExtension, getModifierExtension, hasModifierExtension

Field Details

coordinateSystem

protected CodeableConcept coordinateSystem

These are different ways of identifying nucleotides or amino acids within a sequence. Different databases and file types may use different systems. For detail definitions, see https://loinc.org/92822-6/ for more detail.

ordinalPosition

protected IntegerType ordinalPosition

Indicates the order in which the sequence should be considered when putting multiple 'relative' elements together.

sequenceRange

protected Range sequenceRange

Indicates the nucleotide range in the composed sequence when multiple 'relative' elements are used together.

startingSequence

protected MolecularSequence.MolecularSequenceRelativeStartingSequenceComponent startingSequence

A sequence that is used as a starting sequence to describe variants that are present in a sequence analyzed.

edit

protected List<MolecularSequence.MolecularSequenceRelativeEditComponent> edit

Changes in sequence from the starting sequence.

Constructor Details

MolecularSequenceRelativeComponent

public MolecularSequenceRelativeComponent()

Constructor

MolecularSequenceRelativeComponent

public MolecularSequenceRelativeComponent(CodeableConcept coordinateSystem)

Constructor

Method Details

getCoordinateSystem

public CodeableConcept getCoordinateSystem()

Returns:

coordinateSystem (These are different ways of identifying nucleotides or amino acids within a sequence. Different databases and file types may use different systems. For detail definitions, see https://loinc.org/92822-6/ for more detail.)

hasCoordinateSystem

public boolean hasCoordinateSystem()

setCoordinateSystem

public MolecularSequence.MolecularSequenceRelativeComponent setCoordinateSystem(CodeableConcept value)

Parameters:

value - coordinateSystem (These are different ways of identifying nucleotides or amino acids within a sequence. Different databases and file types may use different systems. For detail definitions, see https://loinc.org/92822-6/ for more detail.)

getOrdinalPositionElement

public IntegerType getOrdinalPositionElement()

Returns:

ordinalPosition (Indicates the order in which the sequence should be considered when putting multiple 'relative' elements together.). This is the underlying object with id, value and extensions. The accessor "getOrdinalPosition" gives direct access to the value

hasOrdinalPositionElement

public boolean hasOrdinalPositionElement()

hasOrdinalPosition

public boolean hasOrdinalPosition()

setOrdinalPositionElement

public MolecularSequence.MolecularSequenceRelativeComponent setOrdinalPositionElement(IntegerType value)

Parameters:

value - ordinalPosition (Indicates the order in which the sequence should be considered when putting multiple 'relative' elements together.). This is the underlying object with id, value and extensions. The accessor "getOrdinalPosition" gives direct access to the value

getOrdinalPosition

public int getOrdinalPosition()

Returns:

Indicates the order in which the sequence should be considered when putting multiple 'relative' elements together.

setOrdinalPosition

public MolecularSequence.MolecularSequenceRelativeComponent setOrdinalPosition(int value)

Parameters:

value - Indicates the order in which the sequence should be considered when putting multiple 'relative' elements together.

getSequenceRange

public Range getSequenceRange()

Returns:

sequenceRange (Indicates the nucleotide range in the composed sequence when multiple 'relative' elements are used together.)

hasSequenceRange

public boolean hasSequenceRange()

setSequenceRange

public MolecularSequence.MolecularSequenceRelativeComponent setSequenceRange(Range value)

Parameters:

value - sequenceRange (Indicates the nucleotide range in the composed sequence when multiple 'relative' elements are used together.)

getStartingSequence

public MolecularSequence.MolecularSequenceRelativeStartingSequenceComponent getStartingSequence()

Returns:

startingSequence (A sequence that is used as a starting sequence to describe variants that are present in a sequence analyzed.)

hasStartingSequence

public boolean hasStartingSequence()

setStartingSequence

public MolecularSequence.MolecularSequenceRelativeComponent setStartingSequence(MolecularSequence.MolecularSequenceRelativeStartingSequenceComponent value)

Parameters:

value - startingSequence (A sequence that is used as a starting sequence to describe variants that are present in a sequence analyzed.)

getEdit

public List<MolecularSequence.MolecularSequenceRelativeEditComponent> getEdit()

Returns:

edit (Changes in sequence from the starting sequence.)

setEdit

public MolecularSequence.MolecularSequenceRelativeComponent setEdit(List<MolecularSequence.MolecularSequenceRelativeEditComponent> theEdit)

Returns:

Returns a reference to this for easy method chaining

hasEdit

public boolean hasEdit()

addEdit

public MolecularSequence.MolecularSequenceRelativeEditComponent addEdit()

addEdit

public MolecularSequence.MolecularSequenceRelativeComponent addEdit(MolecularSequence.MolecularSequenceRelativeEditComponent t)

getEditFirstRep

public MolecularSequence.MolecularSequenceRelativeEditComponent getEditFirstRep()

Returns:

The first repetition of repeating field edit, creating it if it does not already exist {3}

listChildren

protected void listChildren(List<Property> children)

Overrides:

listChildren in class BackboneElement

getNamedProperty

public Property getNamedProperty(int _hash,
 String _name,
 boolean _checkValid)
                          throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getNamedProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

getProperty

public Base[] getProperty(int hash,
 String name,
 boolean checkValid)
                   throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

setProperty

public Base setProperty(int hash,
 String name,
 Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

setProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

setProperty

public Base setProperty(String name,
 Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

setProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

removeChild

public void removeChild(String name,
 Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

removeChild in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

makeProperty

public Base makeProperty(int hash,
 String name)
                  throws org.hl7.fhir.exceptions.FHIRException

Overrides:

makeProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

getTypesForProperty

public String[] getTypesForProperty(int hash,
 String name)
                             throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getTypesForProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

addChild

public Base addChild(String name)
              throws org.hl7.fhir.exceptions.FHIRException

Overrides:

addChild in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

copy

public MolecularSequence.MolecularSequenceRelativeComponent copy()

Specified by:

copy in class BackboneElement

copyValues

public void copyValues(MolecularSequence.MolecularSequenceRelativeComponent dst)

equalsDeep

public boolean equalsDeep(Base other_)

Overrides:

equalsDeep in class BackboneElement

equalsShallow

public boolean equalsShallow(Base other_)

Overrides:

equalsShallow in class BackboneElement

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface org.hl7.fhir.instance.model.api.IBase

Overrides:

isEmpty in class BackboneElement

fhirType

public String fhirType()

Specified by:

fhirType in interface org.hl7.fhir.instance.model.api.IBase

Overrides:

fhirType in class BackboneElement

Returns:

the FHIR type name of the instance (not the java class name)