Package org.hl7.fhir.r5.model

Class SubstanceProtein.SubstanceProteinSubunitComponent

java.lang.Object

org.hl7.fhir.r5.model.Base

org.hl7.fhir.r5.model.Element

org.hl7.fhir.r5.model.BackboneElement

org.hl7.fhir.r5.model.SubstanceProtein.SubstanceProteinSubunitComponent

All Implemented Interfaces:

ca.uhn.fhir.model.api.IElement, Serializable, org.hl7.fhir.instance.model.api.IBase, org.hl7.fhir.instance.model.api.IBaseBackboneElement, org.hl7.fhir.instance.model.api.IBaseElement, org.hl7.fhir.instance.model.api.IBaseHasExtensions, org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions

Enclosing class:

SubstanceProtein

public static class SubstanceProtein.SubstanceProteinSubunitComponent
extends BackboneElement
implements org.hl7.fhir.instance.model.api.IBaseBackboneElement

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class org.hl7.fhir.r5.model.Base

Base.ProfileSource, Base.ValidationInfo, Base.ValidationMode, Base.ValidationReason

Field Summary

Fields

Modifier and Type	Field	Description
protected StringType	cTerminalModification	The modification at the C-terminal shall be specified.
protected Identifier	cTerminalModificationId	Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.
protected IntegerType	length	Length of linear sequences of amino acids contained in the subunit.
protected StringType	nTerminalModification	The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.
protected Identifier	nTerminalModificationId	Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.
protected StringType	sequence	The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes.
protected Attachment	sequenceAttachment	The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes.
protected IntegerType	subunit	Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length.

Fields inherited from class org.hl7.fhir.r5.model.BackboneElement

modifierExtension

Fields inherited from class org.hl7.fhir.r5.model.Element

extension, id

Constructor Summary

Constructors

Constructor	Description
SubstanceProteinSubunitComponent()	Constructor

Method Summary

Modifier and Type	Method	Description
Base	addChild(String name)
SubstanceProtein.SubstanceProteinSubunitComponent	copy()
void	copyValues(SubstanceProtein.SubstanceProteinSubunitComponent dst)
boolean	equalsDeep(Base other_)
boolean	equalsShallow(Base other_)
String	fhirType()
String	getCTerminalModification()
StringType	getCTerminalModificationElement()
Identifier	getCTerminalModificationId()
int	getLength()
IntegerType	getLengthElement()
Property	getNamedProperty(int _hash, String _name, boolean _checkValid)
String	getNTerminalModification()
StringType	getNTerminalModificationElement()
Identifier	getNTerminalModificationId()
Base[]	getProperty(int hash, String name, boolean checkValid)
String	getSequence()
Attachment	getSequenceAttachment()
StringType	getSequenceElement()
int	getSubunit()
IntegerType	getSubunitElement()
String[]	getTypesForProperty(int hash, String name)
boolean	hasCTerminalModification()
boolean	hasCTerminalModificationElement()
boolean	hasCTerminalModificationId()
boolean	hasLength()
boolean	hasLengthElement()
boolean	hasNTerminalModification()
boolean	hasNTerminalModificationElement()
boolean	hasNTerminalModificationId()
boolean	hasSequence()
boolean	hasSequenceAttachment()
boolean	hasSequenceElement()
boolean	hasSubunit()
boolean	hasSubunitElement()
boolean	isEmpty()
protected void	listChildren(List<Property> children)
Base	makeProperty(int hash, String name)
SubstanceProtein.SubstanceProteinSubunitComponent	setCTerminalModification(String value)
SubstanceProtein.SubstanceProteinSubunitComponent	setCTerminalModificationElement(StringType value)
SubstanceProtein.SubstanceProteinSubunitComponent	setCTerminalModificationId(Identifier value)
SubstanceProtein.SubstanceProteinSubunitComponent	setLength(int value)
SubstanceProtein.SubstanceProteinSubunitComponent	setLengthElement(IntegerType value)
SubstanceProtein.SubstanceProteinSubunitComponent	setNTerminalModification(String value)
SubstanceProtein.SubstanceProteinSubunitComponent	setNTerminalModificationElement(StringType value)
SubstanceProtein.SubstanceProteinSubunitComponent	setNTerminalModificationId(Identifier value)
Base	setProperty(int hash, String name, Base value)
Base	setProperty(String name, Base value)
SubstanceProtein.SubstanceProteinSubunitComponent	setSequence(String value)
SubstanceProtein.SubstanceProteinSubunitComponent	setSequenceAttachment(Attachment value)
SubstanceProtein.SubstanceProteinSubunitComponent	setSequenceElement(StringType value)
SubstanceProtein.SubstanceProteinSubunitComponent	setSubunit(int value)
SubstanceProtein.SubstanceProteinSubunitComponent	setSubunitElement(IntegerType value)

Methods inherited from class org.hl7.fhir.r5.model.BackboneElement

addModifierExtension, addModifierExtension, addModifierExtension, checkNoModifiers, copyExtensions, copyValues, getExtensionByUrl, getExtensionsByUrl, getModifierExtension, getModifierExtensionFirstRep, hasModifierExtension, removeExtension, setModifierExtension

Methods inherited from class org.hl7.fhir.r5.model.Element

addExtension, addExtension, addExtension, copyExtensions, copyNewExtensions, copyValues, getExtension, getExtensionFirstRep, getExtensionsByUrl, getExtensionString, getId, getIdBase, getIdElement, getStandardsStatus, hasExtension, hasExtension, hasExtension, hasExtension, hasId, hasIdElement, isDisallowExtensions, noExtensions, setDisallowExtensions, setExtension, setId, setIdBase, setIdElement, setStandardsStatus

Methods inherited from class org.hl7.fhir.r5.model.Base

addDefinition, addFormatCommentsPost, addFormatCommentsPre, addValidationMessage, children, clearUserData, compareDeep, compareDeep, compareDeep, compareDeep, compareValues, compareValues, copyFormatComments, copyUserData, copyValues, dateTimeValue, equals, getChildByName, getFormatCommentsPost, getFormatCommentsPre, getNamedProperty, getUserData, getUserInt, getUserString, getValidationInfo, getValidationMessages, getXhtml, hasFormatComment, hasFormatCommentPost, hasFormatCommentPre, hasPrimitiveValue, hasType, hasUserData, hasValidationInfo, hasValidationMessages, isBooleanPrimitive, isCopyUserData, isDateTime, isMetadataBased, isPrimitive, isResource, listChildrenByName, listChildrenByName, primitiveValue, removeChild, setCopyUserData, setUserData, setUserDataINN

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hl7.fhir.instance.model.api.IBase

getFormatCommentsPost, getFormatCommentsPre, getUserData, hasFormatComment, setUserData

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseElement

getUserData, setUserData

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasExtensions

addExtension, getExtension, hasExtension

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions

addModifierExtension, getModifierExtension, hasModifierExtension

Field Details

subunit

protected IntegerType subunit

Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.

sequence

protected StringType sequence

The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.

length

protected IntegerType length

Length of linear sequences of amino acids contained in the subunit.

sequenceAttachment

protected Attachment sequenceAttachment

The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.

nTerminalModificationId

protected Identifier nTerminalModificationId

Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.

nTerminalModification

protected StringType nTerminalModification

The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.

cTerminalModificationId

protected Identifier cTerminalModificationId

Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.

cTerminalModification

protected StringType cTerminalModification

The modification at the C-terminal shall be specified.

Constructor Details

SubstanceProteinSubunitComponent

public SubstanceProteinSubunitComponent()

Constructor

Method Details

getSubunitElement

public IntegerType getSubunitElement()

Returns:

subunit (Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.). This is the underlying object with id, value and extensions. The accessor "getSubunit" gives direct access to the value

hasSubunitElement

public boolean hasSubunitElement()

hasSubunit

public boolean hasSubunit()

setSubunitElement

public SubstanceProtein.SubstanceProteinSubunitComponent setSubunitElement(IntegerType value)

Parameters:

value - subunit (Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.). This is the underlying object with id, value and extensions. The accessor "getSubunit" gives direct access to the value

getSubunit

public int getSubunit()

Returns:

Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.

setSubunit

public SubstanceProtein.SubstanceProteinSubunitComponent setSubunit(int value)

Parameters:

value - Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.

getSequenceElement

public StringType getSequenceElement()

Returns:

sequence (The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.). This is the underlying object with id, value and extensions. The accessor "getSequence" gives direct access to the value

hasSequenceElement

public boolean hasSequenceElement()

hasSequence

public boolean hasSequence()

setSequenceElement

public SubstanceProtein.SubstanceProteinSubunitComponent setSequenceElement(StringType value)

Parameters:

value - sequence (The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.). This is the underlying object with id, value and extensions. The accessor "getSequence" gives direct access to the value

getSequence

public String getSequence()

Returns:

The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.

setSequence

public SubstanceProtein.SubstanceProteinSubunitComponent setSequence(String value)

Parameters:

value - The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.

getLengthElement

public IntegerType getLengthElement()

Returns:

length (Length of linear sequences of amino acids contained in the subunit.). This is the underlying object with id, value and extensions. The accessor "getLength" gives direct access to the value

hasLengthElement

public boolean hasLengthElement()

hasLength

public boolean hasLength()

setLengthElement

public SubstanceProtein.SubstanceProteinSubunitComponent setLengthElement(IntegerType value)

Parameters:

value - length (Length of linear sequences of amino acids contained in the subunit.). This is the underlying object with id, value and extensions. The accessor "getLength" gives direct access to the value

getLength

public int getLength()

Returns:

Length of linear sequences of amino acids contained in the subunit.

setLength

public SubstanceProtein.SubstanceProteinSubunitComponent setLength(int value)

Parameters:

value - Length of linear sequences of amino acids contained in the subunit.

getSequenceAttachment

public Attachment getSequenceAttachment()

Returns:

sequenceAttachment (The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.)

hasSequenceAttachment

public boolean hasSequenceAttachment()

setSequenceAttachment

public SubstanceProtein.SubstanceProteinSubunitComponent setSequenceAttachment(Attachment value)

Parameters:

value - sequenceAttachment (The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.)

getNTerminalModificationId

public Identifier getNTerminalModificationId()

Returns:

nTerminalModificationId (Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.)

hasNTerminalModificationId

public boolean hasNTerminalModificationId()

setNTerminalModificationId

public SubstanceProtein.SubstanceProteinSubunitComponent setNTerminalModificationId(Identifier value)

Parameters:

value - nTerminalModificationId (Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.)

getNTerminalModificationElement

public StringType getNTerminalModificationElement()

Returns:

nTerminalModification (The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.). This is the underlying object with id, value and extensions. The accessor "getNTerminalModification" gives direct access to the value

hasNTerminalModificationElement

public boolean hasNTerminalModificationElement()

hasNTerminalModification

public boolean hasNTerminalModification()

setNTerminalModificationElement

public SubstanceProtein.SubstanceProteinSubunitComponent setNTerminalModificationElement(StringType value)

Parameters:

value - nTerminalModification (The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.). This is the underlying object with id, value and extensions. The accessor "getNTerminalModification" gives direct access to the value

getNTerminalModification

public String getNTerminalModification()

Returns:

The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.

setNTerminalModification

public SubstanceProtein.SubstanceProteinSubunitComponent setNTerminalModification(String value)

Parameters:

value - The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.

getCTerminalModificationId

public Identifier getCTerminalModificationId()

Returns:

cTerminalModificationId (Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.)

hasCTerminalModificationId

public boolean hasCTerminalModificationId()

setCTerminalModificationId

public SubstanceProtein.SubstanceProteinSubunitComponent setCTerminalModificationId(Identifier value)

Parameters:

value - cTerminalModificationId (Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.)

getCTerminalModificationElement

public StringType getCTerminalModificationElement()

Returns:

cTerminalModification (The modification at the C-terminal shall be specified.). This is the underlying object with id, value and extensions. The accessor "getCTerminalModification" gives direct access to the value

hasCTerminalModificationElement

public boolean hasCTerminalModificationElement()

hasCTerminalModification

public boolean hasCTerminalModification()

setCTerminalModificationElement

public SubstanceProtein.SubstanceProteinSubunitComponent setCTerminalModificationElement(StringType value)

Parameters:

value - cTerminalModification (The modification at the C-terminal shall be specified.). This is the underlying object with id, value and extensions. The accessor "getCTerminalModification" gives direct access to the value

getCTerminalModification

public String getCTerminalModification()

Returns:

The modification at the C-terminal shall be specified.

setCTerminalModification

public SubstanceProtein.SubstanceProteinSubunitComponent setCTerminalModification(String value)

Parameters:

value - The modification at the C-terminal shall be specified.

listChildren

protected void listChildren(List<Property> children)

Overrides:

listChildren in class BackboneElement

getNamedProperty

public Property getNamedProperty(int _hash,
 String _name,
 boolean _checkValid)
                          throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getNamedProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

getProperty

public Base[] getProperty(int hash,
 String name,
 boolean checkValid)
                   throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

setProperty

public Base setProperty(int hash,
 String name,
 Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

setProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

setProperty

public Base setProperty(String name,
 Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

setProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

makeProperty

public Base makeProperty(int hash,
 String name)
                  throws org.hl7.fhir.exceptions.FHIRException

Overrides:

makeProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

getTypesForProperty

public String[] getTypesForProperty(int hash,
 String name)
                             throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getTypesForProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

addChild

public Base addChild(String name)
              throws org.hl7.fhir.exceptions.FHIRException

Overrides:

addChild in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

copy

public SubstanceProtein.SubstanceProteinSubunitComponent copy()

Specified by:

copy in class BackboneElement

copyValues

public void copyValues(SubstanceProtein.SubstanceProteinSubunitComponent dst)

equalsDeep

public boolean equalsDeep(Base other_)

Overrides:

equalsDeep in class BackboneElement

equalsShallow

public boolean equalsShallow(Base other_)

Overrides:

equalsShallow in class BackboneElement

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface org.hl7.fhir.instance.model.api.IBase

Overrides:

isEmpty in class BackboneElement

fhirType

public String fhirType()

Specified by:

fhirType in interface org.hl7.fhir.instance.model.api.IBase

Overrides:

fhirType in class BackboneElement