Package org.hl7.fhir.r5.model

Class SubstanceProtein.SubstanceProteinSubunitComponent

java.lang.Object
org.hl7.fhir.r5.model.Base
org.hl7.fhir.r5.model.Element
org.hl7.fhir.r5.model.BackboneElement
org.hl7.fhir.r5.model.SubstanceProtein.SubstanceProteinSubunitComponent
All Implemented Interfaces:
ca.uhn.fhir.model.api.IElement, Serializable, org.hl7.fhir.instance.model.api.IBase, org.hl7.fhir.instance.model.api.IBaseBackboneElement, org.hl7.fhir.instance.model.api.IBaseElement, org.hl7.fhir.instance.model.api.IBaseHasExtensions, org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions
Enclosing class:
SubstanceProtein
public static class SubstanceProtein.SubstanceProteinSubunitComponent extends BackboneElement implements org.hl7.fhir.instance.model.api.IBaseBackboneElement
See Also:

  • Field Details

    • subunit

      protected IntegerType subunit
      Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.

    • sequence

      protected StringType sequence
      The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.

    • length

      protected IntegerType length
      Length of linear sequences of amino acids contained in the subunit.

    • sequenceAttachment

      protected Attachment sequenceAttachment
      The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.

    • nTerminalModificationId

      protected Identifier nTerminalModificationId
      Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.

    • nTerminalModification

      protected StringType nTerminalModification
      The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.

    • cTerminalModificationId

      protected Identifier cTerminalModificationId
      Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.

    • cTerminalModification

      protected StringType cTerminalModification
      The modification at the C-terminal shall be specified.

  • Constructor Details

  • Method Details

    • getSubunitElement

      public IntegerType getSubunitElement()
      Returns:
      subunit (Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.). This is the underlying object with id, value and extensions. The accessor "getSubunit" gives direct access to the value

    • hasSubunitElement

      public boolean hasSubunitElement()

    • hasSubunit

      public boolean hasSubunit()

    • setSubunitElement

      public SubstanceProtein.SubstanceProteinSubunitComponent setSubunitElement(IntegerType value)
      Parameters:
      value - subunit (Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.). This is the underlying object with id, value and extensions. The accessor "getSubunit" gives direct access to the value

    • getSubunit

      public int getSubunit()
      Returns:
      Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.

    • setSubunit

      public SubstanceProtein.SubstanceProteinSubunitComponent setSubunit(int value)
      Parameters:
      value - Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.

    • getSequenceElement

      public StringType getSequenceElement()
      Returns:
      sequence (The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.). This is the underlying object with id, value and extensions. The accessor "getSequence" gives direct access to the value

    • hasSequenceElement

      public boolean hasSequenceElement()

    • hasSequence

      public boolean hasSequence()

    • setSequenceElement

      public SubstanceProtein.SubstanceProteinSubunitComponent setSequenceElement(StringType value)
      Parameters:
      value - sequence (The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.). This is the underlying object with id, value and extensions. The accessor "getSequence" gives direct access to the value

    • getSequence

      public String getSequence()
      Returns:
      The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.

    • setSequence

      public SubstanceProtein.SubstanceProteinSubunitComponent setSequence(String value)
      Parameters:
      value - The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.

    • getLengthElement

      public IntegerType getLengthElement()
      Returns:
      length (Length of linear sequences of amino acids contained in the subunit.). This is the underlying object with id, value and extensions. The accessor "getLength" gives direct access to the value

    • hasLengthElement

      public boolean hasLengthElement()

    • hasLength

      public boolean hasLength()

    • setLengthElement

      public SubstanceProtein.SubstanceProteinSubunitComponent setLengthElement(IntegerType value)
      Parameters:
      value - length (Length of linear sequences of amino acids contained in the subunit.). This is the underlying object with id, value and extensions. The accessor "getLength" gives direct access to the value

    • getLength

      public int getLength()
      Returns:
      Length of linear sequences of amino acids contained in the subunit.

    • setLength

      public SubstanceProtein.SubstanceProteinSubunitComponent setLength(int value)
      Parameters:
      value - Length of linear sequences of amino acids contained in the subunit.

    • getSequenceAttachment

      public Attachment getSequenceAttachment()
      Returns:
      sequenceAttachment (The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.)

    • hasSequenceAttachment

      public boolean hasSequenceAttachment()

    • setSequenceAttachment

      public SubstanceProtein.SubstanceProteinSubunitComponent setSequenceAttachment(Attachment value)
      Parameters:
      value - sequenceAttachment (The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.)

    • getNTerminalModificationId

      public Identifier getNTerminalModificationId()
      Returns:
      nTerminalModificationId (Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.)

    • hasNTerminalModificationId

      public boolean hasNTerminalModificationId()

    • setNTerminalModificationId

      public SubstanceProtein.SubstanceProteinSubunitComponent setNTerminalModificationId(Identifier value)
      Parameters:
      value - nTerminalModificationId (Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.)

    • getNTerminalModificationElement

      public StringType getNTerminalModificationElement()
      Returns:
      nTerminalModification (The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.). This is the underlying object with id, value and extensions. The accessor "getNTerminalModification" gives direct access to the value

    • hasNTerminalModificationElement

      public boolean hasNTerminalModificationElement()

    • hasNTerminalModification

      public boolean hasNTerminalModification()

    • setNTerminalModificationElement

      public SubstanceProtein.SubstanceProteinSubunitComponent setNTerminalModificationElement(StringType value)
      Parameters:
      value - nTerminalModification (The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.). This is the underlying object with id, value and extensions. The accessor "getNTerminalModification" gives direct access to the value

    • getNTerminalModification

      public String getNTerminalModification()
      Returns:
      The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.

    • setNTerminalModification

      public SubstanceProtein.SubstanceProteinSubunitComponent setNTerminalModification(String value)
      Parameters:
      value - The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.

    • getCTerminalModificationId

      public Identifier getCTerminalModificationId()
      Returns:
      cTerminalModificationId (Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.)

    • hasCTerminalModificationId

      public boolean hasCTerminalModificationId()

    • setCTerminalModificationId

      public SubstanceProtein.SubstanceProteinSubunitComponent setCTerminalModificationId(Identifier value)
      Parameters:
      value - cTerminalModificationId (Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.)

    • getCTerminalModificationElement

      public StringType getCTerminalModificationElement()
      Returns:
      cTerminalModification (The modification at the C-terminal shall be specified.). This is the underlying object with id, value and extensions. The accessor "getCTerminalModification" gives direct access to the value

    • hasCTerminalModificationElement

      public boolean hasCTerminalModificationElement()

    • hasCTerminalModification

      public boolean hasCTerminalModification()

    • setCTerminalModificationElement

      public SubstanceProtein.SubstanceProteinSubunitComponent setCTerminalModificationElement(StringType value)
      Parameters:
      value - cTerminalModification (The modification at the C-terminal shall be specified.). This is the underlying object with id, value and extensions. The accessor "getCTerminalModification" gives direct access to the value

    • getCTerminalModification

      public String getCTerminalModification()
      Returns:
      The modification at the C-terminal shall be specified.

    • setCTerminalModification

      public SubstanceProtein.SubstanceProteinSubunitComponent setCTerminalModification(String value)
      Parameters:
      value - The modification at the C-terminal shall be specified.

    • listChildren

      protected void listChildren(List<Property> children)
      Overrides:
      listChildren in class BackboneElement

    • getNamedProperty

      public Property getNamedProperty(int _hash, String _name, boolean _checkValid) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      getNamedProperty in class BackboneElement
      Throws:
      org.hl7.fhir.exceptions.FHIRException

    • getProperty

      public Base[] getProperty(int hash, String name, boolean checkValid) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      getProperty in class BackboneElement
      Throws:
      org.hl7.fhir.exceptions.FHIRException

    • setProperty

      public Base setProperty(int hash, String name, Base value) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      setProperty in class BackboneElement
      Throws:
      org.hl7.fhir.exceptions.FHIRException

    • setProperty

      public Base setProperty(String name, Base value) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      setProperty in class BackboneElement
      Throws:
      org.hl7.fhir.exceptions.FHIRException

    • removeChild

      public void removeChild(String name, Base value) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      removeChild in class BackboneElement
      Throws:
      org.hl7.fhir.exceptions.FHIRException

    • makeProperty

      public Base makeProperty(int hash, String name) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      makeProperty in class BackboneElement
      Throws:
      org.hl7.fhir.exceptions.FHIRException

    • getTypesForProperty

      public String[] getTypesForProperty(int hash, String name) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      getTypesForProperty in class BackboneElement
      Throws:
      org.hl7.fhir.exceptions.FHIRException

    • addChild

      public Base addChild(String name) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      addChild in class BackboneElement
      Throws:
      org.hl7.fhir.exceptions.FHIRException

    • copy

      public SubstanceProtein.SubstanceProteinSubunitComponent copy()
      Specified by:
      copy in class BackboneElement

    • copyValues

      public void copyValues(SubstanceProtein.SubstanceProteinSubunitComponent dst)

    • equalsDeep

      public boolean equalsDeep(Base other_)
      Overrides:
      equalsDeep in class BackboneElement

    • equalsShallow

      public boolean equalsShallow(Base other_)
      Overrides:
      equalsShallow in class BackboneElement

    • isEmpty

      public boolean isEmpty()
      Specified by:
      isEmpty in interface org.hl7.fhir.instance.model.api.IBase
      Overrides:
      isEmpty in class BackboneElement

    • fhirType

      public String fhirType()
      Specified by:
      fhirType in interface org.hl7.fhir.instance.model.api.IBase
      Overrides:
      fhirType in class BackboneElement
      Returns:
      the FHIR type name of the instance (not the java class name)