Package org.hl7.fhir.r5.model

Class SubstanceProtein

java.lang.Object
org.hl7.fhir.r5.model.Base
org.hl7.fhir.r5.model.BaseResource
org.hl7.fhir.r5.model.Resource
org.hl7.fhir.r5.model.DomainResource
org.hl7.fhir.r5.model.SubstanceProtein
All Implemented Interfaces:
ca.uhn.fhir.model.api.IElement, Serializable, org.hl7.fhir.instance.model.api.IAnyResource, org.hl7.fhir.instance.model.api.IBase, org.hl7.fhir.instance.model.api.IBaseHasExtensions, org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions, org.hl7.fhir.instance.model.api.IBaseResource, org.hl7.fhir.instance.model.api.IDomainResource
public class SubstanceProtein extends DomainResource
A SubstanceProtein is defined as a single unit of a linear amino acid sequence, or a combination of subunits that are either covalently linked or have a defined invariant stoichiometric relationship. This includes all synthetic, recombinant and purified SubstanceProteins of defined sequence, whether the use is therapeutic or prophylactic. This set of elements will be used to describe albumins, coagulation factors, cytokines, growth factors, peptide/SubstanceProtein hormones, enzymes, toxins, toxoids, recombinant vaccines, and immunomodulators.
See Also:

  • Field Details

    • sequenceType

      protected CodeableConcept sequenceType
      The SubstanceProtein descriptive elements will only be used when a complete or partial amino acid sequence is available or derivable from a nucleic acid sequence.

    • numberOfSubunits

      protected IntegerType numberOfSubunits
      Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable.

    • disulfideLinkage

      protected List<StringType> disulfideLinkage
      The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions.

    • subunit

      protected List<SubstanceProtein.SubstanceProteinSubunitComponent> subunit
      This subclause refers to the description of each subunit constituting the SubstanceProtein. A subunit is a linear sequence of amino acids linked through peptide bonds. The Subunit information shall be provided when the finished SubstanceProtein is a complex of multiple sequences; subunits are not used to delineate domains within a single sequence. Subunits are listed in order of decreasing length; sequences of the same length will be ordered by decreasing molecular weight; subunits that have identical sequences will be repeated multiple times.

  • Constructor Details

  • Method Details

    • getSequenceType

      public CodeableConcept getSequenceType()
      Returns:
      sequenceType (The SubstanceProtein descriptive elements will only be used when a complete or partial amino acid sequence is available or derivable from a nucleic acid sequence.)

    • hasSequenceType

      public boolean hasSequenceType()

    • setSequenceType

      public SubstanceProtein setSequenceType(CodeableConcept value)
      Parameters:
      value - sequenceType (The SubstanceProtein descriptive elements will only be used when a complete or partial amino acid sequence is available or derivable from a nucleic acid sequence.)

    • getNumberOfSubunitsElement

      public IntegerType getNumberOfSubunitsElement()
      Returns:
      numberOfSubunits (Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable.). This is the underlying object with id, value and extensions. The accessor "getNumberOfSubunits" gives direct access to the value

    • hasNumberOfSubunitsElement

      public boolean hasNumberOfSubunitsElement()

    • hasNumberOfSubunits

      public boolean hasNumberOfSubunits()

    • setNumberOfSubunitsElement

      public SubstanceProtein setNumberOfSubunitsElement(IntegerType value)
      Parameters:
      value - numberOfSubunits (Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable.). This is the underlying object with id, value and extensions. The accessor "getNumberOfSubunits" gives direct access to the value

    • getNumberOfSubunits

      public int getNumberOfSubunits()
      Returns:
      Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable.

    • setNumberOfSubunits

      public SubstanceProtein setNumberOfSubunits(int value)
      Parameters:
      value - Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable.

    • getDisulfideLinkage

      public List<StringType> getDisulfideLinkage()
      Returns:
      disulfideLinkage (The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions.)

    • setDisulfideLinkage

      public SubstanceProtein setDisulfideLinkage(List<StringType> theDisulfideLinkage)
      Returns:
      Returns a reference to this for easy method chaining

    • hasDisulfideLinkage

      public boolean hasDisulfideLinkage()

    • addDisulfideLinkageElement

      public StringType addDisulfideLinkageElement()
      Returns:
      disulfideLinkage (The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions.)

    • addDisulfideLinkage

      public SubstanceProtein addDisulfideLinkage(String value)
      Parameters:
      value - disulfideLinkage (The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions.)

    • hasDisulfideLinkage

      public boolean hasDisulfideLinkage(String value)
      Parameters:
      value - disulfideLinkage (The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions.)

    • getSubunit

      public List<SubstanceProtein.SubstanceProteinSubunitComponent> getSubunit()
      Returns:
      subunit (This subclause refers to the description of each subunit constituting the SubstanceProtein. A subunit is a linear sequence of amino acids linked through peptide bonds. The Subunit information shall be provided when the finished SubstanceProtein is a complex of multiple sequences; subunits are not used to delineate domains within a single sequence. Subunits are listed in order of decreasing length; sequences of the same length will be ordered by decreasing molecular weight; subunits that have identical sequences will be repeated multiple times.)

    • setSubunit

      public SubstanceProtein setSubunit(List<SubstanceProtein.SubstanceProteinSubunitComponent> theSubunit)
      Returns:
      Returns a reference to this for easy method chaining

    • hasSubunit

      public boolean hasSubunit()

    • addSubunit

      public SubstanceProtein.SubstanceProteinSubunitComponent addSubunit()

    • addSubunit

      public SubstanceProtein addSubunit(SubstanceProtein.SubstanceProteinSubunitComponent t)

    • getSubunitFirstRep

      public SubstanceProtein.SubstanceProteinSubunitComponent getSubunitFirstRep()
      Returns:
      The first repetition of repeating field subunit, creating it if it does not already exist {3}

    • listChildren

      protected void listChildren(List<Property> children)
      Overrides:
      listChildren in class DomainResource

    • getNamedProperty

      public Property getNamedProperty(int _hash, String _name, boolean _checkValid) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      getNamedProperty in class DomainResource
      Throws:
      org.hl7.fhir.exceptions.FHIRException

    • getProperty

      public Base[] getProperty(int hash, String name, boolean checkValid) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      getProperty in class DomainResource
      Throws:
      org.hl7.fhir.exceptions.FHIRException

    • setProperty

      public Base setProperty(int hash, String name, Base value) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      setProperty in class DomainResource
      Throws:
      org.hl7.fhir.exceptions.FHIRException

    • setProperty

      public Base setProperty(String name, Base value) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      setProperty in class DomainResource
      Throws:
      org.hl7.fhir.exceptions.FHIRException

    • removeChild

      public void removeChild(String name, Base value) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      removeChild in class DomainResource
      Throws:
      org.hl7.fhir.exceptions.FHIRException

    • makeProperty

      public Base makeProperty(int hash, String name) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      makeProperty in class DomainResource
      Throws:
      org.hl7.fhir.exceptions.FHIRException

    • getTypesForProperty

      public String[] getTypesForProperty(int hash, String name) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      getTypesForProperty in class DomainResource
      Throws:
      org.hl7.fhir.exceptions.FHIRException

    • addChild

      public Base addChild(String name) throws org.hl7.fhir.exceptions.FHIRException
      Overrides:
      addChild in class DomainResource
      Throws:
      org.hl7.fhir.exceptions.FHIRException

    • fhirType

      public String fhirType()
      Specified by:
      fhirType in interface org.hl7.fhir.instance.model.api.IBase
      Overrides:
      fhirType in class DomainResource
      Returns:
      the FHIR type name of the instance (not the java class name)

    • copy

      public SubstanceProtein copy()
      Specified by:
      copy in class DomainResource

    • copyValues

      public void copyValues(SubstanceProtein dst)

    • typedCopy

      protected SubstanceProtein typedCopy()

    • equalsDeep

      public boolean equalsDeep(Base other_)
      Overrides:
      equalsDeep in class DomainResource

    • equalsShallow

      public boolean equalsShallow(Base other_)
      Overrides:
      equalsShallow in class DomainResource

    • isEmpty

      public boolean isEmpty()
      Specified by:
      isEmpty in interface org.hl7.fhir.instance.model.api.IBase
      Overrides:
      isEmpty in class DomainResource

    • getResourceType

      public ResourceType getResourceType()
      Specified by:
      getResourceType in class Resource