Package org.hl7.fhir.r5.model

Class GenomicStudy.GenomicStudyAnalysisComponent

java.lang.Object

org.hl7.fhir.r5.model.Base

org.hl7.fhir.r5.model.Element

org.hl7.fhir.r5.model.BackboneElement

org.hl7.fhir.r5.model.GenomicStudy.GenomicStudyAnalysisComponent

All Implemented Interfaces:

ca.uhn.fhir.model.api.IElement, Serializable, org.hl7.fhir.instance.model.api.IBase, org.hl7.fhir.instance.model.api.IBaseBackboneElement, org.hl7.fhir.instance.model.api.IBaseElement, org.hl7.fhir.instance.model.api.IBaseHasExtensions, org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions

Enclosing class:

GenomicStudy

public static class GenomicStudy.GenomicStudyAnalysisComponent
extends BackboneElement
implements org.hl7.fhir.instance.model.api.IBaseBackboneElement

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class org.hl7.fhir.r5.model.Base

Base.ProfileSource, Base.ValidationInfo, Base.ValidationMode, Base.ValidationReason

Field Summary

Fields

Modifier and Type	Field	Description
protected List<CodeableConcept>	changeType	Type of the genomic changes studied in the analysis, e.g., DNA, RNA, or amino acid change.
protected DateTimeType	date	The date of the analysis event.
protected List<GenomicStudy.GenomicStudyAnalysisDeviceComponent>	device	Devices used for the analysis (e.g., instruments, software), with settings and parameters.
protected List<Reference>	focus	The focus of a genomic analysis when it is not the patient of record representing something or someone associated with the patient such as a spouse, parent, child, or sibling.
protected CodeableConcept	genomeBuild	The reference genome build that is used in this analysis.
protected List<Identifier>	identifier	Identifiers for the analysis event.
protected List<GenomicStudy.GenomicStudyAnalysisInputComponent>	input	Inputs for the analysis event.
protected CanonicalType	instantiatesCanonical	The defined protocol that describes the analysis.
protected UriType	instantiatesUri	The URL pointing to an externally maintained protocol that describes the analysis.
protected List<CodeableConcept>	methodType	Type of the methods used in the analysis, e.g., Fluorescence in situ hybridization (FISH), Karyotyping, or Microsatellite instability testing (MSI).
protected List<Annotation>	note	Any notes capture with the analysis event.
protected List<GenomicStudy.GenomicStudyAnalysisOutputComponent>	output	Outputs for the analysis event.
protected List<GenomicStudy.GenomicStudyAnalysisPerformerComponent>	performer	Performer for the analysis event.
protected Reference	protocolPerformed	The protocol that was performed for the analysis event.
protected List<Reference>	regionsCalled	Genomic regions actually called in the analysis event (BED file).
protected List<Reference>	regionsStudied	The genomic regions to be studied in the analysis (BED file).
protected List<Reference>	specimen	The specimen used in the analysis event.
protected StringType	title	Name of the analysis event (human friendly).

Fields inherited from class org.hl7.fhir.r5.model.BackboneElement

modifierExtension

Fields inherited from class org.hl7.fhir.r5.model.Element

extension, id

Constructor Summary

Constructors

Constructor	Description
GenomicStudyAnalysisComponent()	Constructor

Method Summary

Modifier and Type	Method	Description
CodeableConcept	addChangeType()
GenomicStudy.GenomicStudyAnalysisComponent	addChangeType(CodeableConcept t)
Base	addChild(String name)
GenomicStudy.GenomicStudyAnalysisDeviceComponent	addDevice()
GenomicStudy.GenomicStudyAnalysisComponent	addDevice(GenomicStudy.GenomicStudyAnalysisDeviceComponent t)
Reference	addFocus()
GenomicStudy.GenomicStudyAnalysisComponent	addFocus(Reference t)
Identifier	addIdentifier()
GenomicStudy.GenomicStudyAnalysisComponent	addIdentifier(Identifier t)
GenomicStudy.GenomicStudyAnalysisInputComponent	addInput()
GenomicStudy.GenomicStudyAnalysisComponent	addInput(GenomicStudy.GenomicStudyAnalysisInputComponent t)
CodeableConcept	addMethodType()
GenomicStudy.GenomicStudyAnalysisComponent	addMethodType(CodeableConcept t)
Annotation	addNote()
GenomicStudy.GenomicStudyAnalysisComponent	addNote(Annotation t)
GenomicStudy.GenomicStudyAnalysisOutputComponent	addOutput()
GenomicStudy.GenomicStudyAnalysisComponent	addOutput(GenomicStudy.GenomicStudyAnalysisOutputComponent t)
GenomicStudy.GenomicStudyAnalysisPerformerComponent	addPerformer()
GenomicStudy.GenomicStudyAnalysisComponent	addPerformer(GenomicStudy.GenomicStudyAnalysisPerformerComponent t)
Reference	addRegionsCalled()
GenomicStudy.GenomicStudyAnalysisComponent	addRegionsCalled(Reference t)
Reference	addRegionsStudied()
GenomicStudy.GenomicStudyAnalysisComponent	addRegionsStudied(Reference t)
Reference	addSpecimen()
GenomicStudy.GenomicStudyAnalysisComponent	addSpecimen(Reference t)
GenomicStudy.GenomicStudyAnalysisComponent	copy()
void	copyValues(GenomicStudy.GenomicStudyAnalysisComponent dst)
boolean	equalsDeep(Base other_)
boolean	equalsShallow(Base other_)
String	fhirType()
List<CodeableConcept>	getChangeType()
CodeableConcept	getChangeTypeFirstRep()
Date	getDate()
DateTimeType	getDateElement()
List<GenomicStudy.GenomicStudyAnalysisDeviceComponent>	getDevice()
GenomicStudy.GenomicStudyAnalysisDeviceComponent	getDeviceFirstRep()
List<Reference>	getFocus()
Reference	getFocusFirstRep()
CodeableConcept	getGenomeBuild()
List<Identifier>	getIdentifier()
Identifier	getIdentifierFirstRep()
List<GenomicStudy.GenomicStudyAnalysisInputComponent>	getInput()
GenomicStudy.GenomicStudyAnalysisInputComponent	getInputFirstRep()
String	getInstantiatesCanonical()
CanonicalType	getInstantiatesCanonicalElement()
String	getInstantiatesUri()
UriType	getInstantiatesUriElement()
List<CodeableConcept>	getMethodType()
CodeableConcept	getMethodTypeFirstRep()
Property	getNamedProperty(int _hash, String _name, boolean _checkValid)
List<Annotation>	getNote()
Annotation	getNoteFirstRep()
List<GenomicStudy.GenomicStudyAnalysisOutputComponent>	getOutput()
GenomicStudy.GenomicStudyAnalysisOutputComponent	getOutputFirstRep()
List<GenomicStudy.GenomicStudyAnalysisPerformerComponent>	getPerformer()
GenomicStudy.GenomicStudyAnalysisPerformerComponent	getPerformerFirstRep()
Base[]	getProperty(int hash, String name, boolean checkValid)
Reference	getProtocolPerformed()
List<Reference>	getRegionsCalled()
Reference	getRegionsCalledFirstRep()
List<Reference>	getRegionsStudied()
Reference	getRegionsStudiedFirstRep()
List<Reference>	getSpecimen()
Reference	getSpecimenFirstRep()
String	getTitle()
StringType	getTitleElement()
String[]	getTypesForProperty(int hash, String name)
boolean	hasChangeType()
boolean	hasDate()
boolean	hasDateElement()
boolean	hasDevice()
boolean	hasFocus()
boolean	hasGenomeBuild()
boolean	hasIdentifier()
boolean	hasInput()
boolean	hasInstantiatesCanonical()
boolean	hasInstantiatesCanonicalElement()
boolean	hasInstantiatesUri()
boolean	hasInstantiatesUriElement()
boolean	hasMethodType()
boolean	hasNote()
boolean	hasOutput()
boolean	hasPerformer()
boolean	hasProtocolPerformed()
boolean	hasRegionsCalled()
boolean	hasRegionsStudied()
boolean	hasSpecimen()
boolean	hasTitle()
boolean	hasTitleElement()
boolean	isEmpty()
protected void	listChildren(List<Property> children)
Base	makeProperty(int hash, String name)
void	removeChild(String name, Base value)
GenomicStudy.GenomicStudyAnalysisComponent	setChangeType(List<CodeableConcept> theChangeType)
GenomicStudy.GenomicStudyAnalysisComponent	setDate(Date value)
GenomicStudy.GenomicStudyAnalysisComponent	setDateElement(DateTimeType value)
GenomicStudy.GenomicStudyAnalysisComponent	setDevice(List<GenomicStudy.GenomicStudyAnalysisDeviceComponent> theDevice)
GenomicStudy.GenomicStudyAnalysisComponent	setFocus(List<Reference> theFocus)
GenomicStudy.GenomicStudyAnalysisComponent	setGenomeBuild(CodeableConcept value)
GenomicStudy.GenomicStudyAnalysisComponent	setIdentifier(List<Identifier> theIdentifier)
GenomicStudy.GenomicStudyAnalysisComponent	setInput(List<GenomicStudy.GenomicStudyAnalysisInputComponent> theInput)
GenomicStudy.GenomicStudyAnalysisComponent	setInstantiatesCanonical(String value)
GenomicStudy.GenomicStudyAnalysisComponent	setInstantiatesCanonicalElement(CanonicalType value)
GenomicStudy.GenomicStudyAnalysisComponent	setInstantiatesUri(String value)
GenomicStudy.GenomicStudyAnalysisComponent	setInstantiatesUriElement(UriType value)
GenomicStudy.GenomicStudyAnalysisComponent	setMethodType(List<CodeableConcept> theMethodType)
GenomicStudy.GenomicStudyAnalysisComponent	setNote(List<Annotation> theNote)
GenomicStudy.GenomicStudyAnalysisComponent	setOutput(List<GenomicStudy.GenomicStudyAnalysisOutputComponent> theOutput)
GenomicStudy.GenomicStudyAnalysisComponent	setPerformer(List<GenomicStudy.GenomicStudyAnalysisPerformerComponent> thePerformer)
Base	setProperty(int hash, String name, Base value)
Base	setProperty(String name, Base value)
GenomicStudy.GenomicStudyAnalysisComponent	setProtocolPerformed(Reference value)
GenomicStudy.GenomicStudyAnalysisComponent	setRegionsCalled(List<Reference> theRegionsCalled)
GenomicStudy.GenomicStudyAnalysisComponent	setRegionsStudied(List<Reference> theRegionsStudied)
GenomicStudy.GenomicStudyAnalysisComponent	setSpecimen(List<Reference> theSpecimen)
GenomicStudy.GenomicStudyAnalysisComponent	setTitle(String value)
GenomicStudy.GenomicStudyAnalysisComponent	setTitleElement(StringType value)

Methods inherited from class org.hl7.fhir.r5.model.BackboneElement

addModifierExtension, addModifierExtension, addModifierExtension, checkNoModifiers, copyExtensions, copyNewExtensions, copyValues, getExtensionByUrl, getExtensionsByUrl, getExtensionsByUrl, getModifierExtension, getModifierExtensionFirstRep, hasExtension, hasExtension, hasModifierExtension, removeExtension, setModifierExtension

Methods inherited from class org.hl7.fhir.r5.model.Element

addExtension, addExtension, addExtension, copyExtensions, copyNewExtensions, copyValues, getExtension, getExtensionFirstRep, getExtensionString, getExtensionString, getFHIRPublicationVersion, getId, getIdBase, getIdElement, getStandardsStatus, hasExtension, hasExtension, hasId, hasIdElement, isDisallowExtensions, noExtensions, setDisallowExtensions, setExtension, setId, setIdBase, setIdElement, setStandardsStatus

Methods inherited from class org.hl7.fhir.r5.model.Base

addDefinition, addFormatCommentsPost, addFormatCommentsPre, addValidationMessage, canHavePrimitiveValue, children, clearUserData, compareDeep, compareDeep, compareDeep, compareDeep, compareValues, compareValues, copyFormatComments, copyUserData, copyValues, dateTimeValue, equals, getChildByName, getChildValueByName, getFormatCommentsPost, getFormatCommentsPre, getNamedProperty, getUserData, getUserInt, getUserString, getValidationInfo, getValidationMessages, getXhtml, hasFormatComment, hasFormatCommentPost, hasFormatCommentPre, hasPrimitiveValue, hasType, hasUserData, hasValidated, hasValidationInfo, hasValidationMessages, isBooleanPrimitive, isCopyUserData, isDateTime, isMetadataBased, isPrimitive, isResource, listChildrenByName, listChildrenByName, primitiveValue, setCopyUserData, setUserData, setUserDataINN

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hl7.fhir.instance.model.api.IBase

getFormatCommentsPost, getFormatCommentsPre, getUserData, hasFormatComment, setUserData

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseElement

getUserData, setUserData

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasExtensions

addExtension, getExtension, hasExtension

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions

addModifierExtension, getModifierExtension, hasModifierExtension

Field Details

identifier

protected List<Identifier> identifier

Identifiers for the analysis event.

methodType

protected List<CodeableConcept> methodType

Type of the methods used in the analysis, e.g., Fluorescence in situ hybridization (FISH), Karyotyping, or Microsatellite instability testing (MSI).

changeType

protected List<CodeableConcept> changeType

Type of the genomic changes studied in the analysis, e.g., DNA, RNA, or amino acid change.

genomeBuild

protected CodeableConcept genomeBuild

The reference genome build that is used in this analysis.

instantiatesCanonical

protected CanonicalType instantiatesCanonical

The defined protocol that describes the analysis.

instantiatesUri

protected UriType instantiatesUri

The URL pointing to an externally maintained protocol that describes the analysis.

title

protected StringType title

Name of the analysis event (human friendly).

focus

protected List<Reference> focus

The focus of a genomic analysis when it is not the patient of record representing something or someone associated with the patient such as a spouse, parent, child, or sibling. For example, in trio testing, the GenomicStudy.subject would be the child (proband) and the GenomicStudy.analysis.focus of a specific analysis would be the parent.

specimen

protected List<Reference> specimen

The specimen used in the analysis event.

date

protected DateTimeType date

The date of the analysis event.

note

protected List<Annotation> note

Any notes capture with the analysis event.

protocolPerformed

protected Reference protocolPerformed

The protocol that was performed for the analysis event.

regionsStudied

protected List<Reference> regionsStudied

The genomic regions to be studied in the analysis (BED file).

regionsCalled

protected List<Reference> regionsCalled

Genomic regions actually called in the analysis event (BED file).

input

protected List<GenomicStudy.GenomicStudyAnalysisInputComponent> input

Inputs for the analysis event.

output

protected List<GenomicStudy.GenomicStudyAnalysisOutputComponent> output

Outputs for the analysis event.

performer

protected List<GenomicStudy.GenomicStudyAnalysisPerformerComponent> performer

Performer for the analysis event.

device

protected List<GenomicStudy.GenomicStudyAnalysisDeviceComponent> device

Devices used for the analysis (e.g., instruments, software), with settings and parameters.

Constructor Details

GenomicStudyAnalysisComponent

public GenomicStudyAnalysisComponent()

Constructor

Method Details

getIdentifier

public List<Identifier> getIdentifier()

Returns:

identifier (Identifiers for the analysis event.)

setIdentifier

public GenomicStudy.GenomicStudyAnalysisComponent setIdentifier(List<Identifier> theIdentifier)

Returns:

Returns a reference to this for easy method chaining

hasIdentifier

public boolean hasIdentifier()

addIdentifier

public Identifier addIdentifier()

addIdentifier

public GenomicStudy.GenomicStudyAnalysisComponent addIdentifier(Identifier t)

getIdentifierFirstRep

public Identifier getIdentifierFirstRep()

Returns:

The first repetition of repeating field identifier, creating it if it does not already exist {3}

getMethodType

public List<CodeableConcept> getMethodType()

Returns:

methodType (Type of the methods used in the analysis, e.g., Fluorescence in situ hybridization (FISH), Karyotyping, or Microsatellite instability testing (MSI).)

setMethodType

public GenomicStudy.GenomicStudyAnalysisComponent setMethodType(List<CodeableConcept> theMethodType)

Returns:

Returns a reference to this for easy method chaining

hasMethodType

public boolean hasMethodType()

addMethodType

public CodeableConcept addMethodType()

addMethodType

public GenomicStudy.GenomicStudyAnalysisComponent addMethodType(CodeableConcept t)

getMethodTypeFirstRep

public CodeableConcept getMethodTypeFirstRep()

Returns:

The first repetition of repeating field methodType, creating it if it does not already exist {3}

getChangeType

public List<CodeableConcept> getChangeType()

Returns:

changeType (Type of the genomic changes studied in the analysis, e.g., DNA, RNA, or amino acid change.)

setChangeType

public GenomicStudy.GenomicStudyAnalysisComponent setChangeType(List<CodeableConcept> theChangeType)

Returns:

Returns a reference to this for easy method chaining

hasChangeType

public boolean hasChangeType()

addChangeType

public CodeableConcept addChangeType()

addChangeType

public GenomicStudy.GenomicStudyAnalysisComponent addChangeType(CodeableConcept t)

getChangeTypeFirstRep

public CodeableConcept getChangeTypeFirstRep()

Returns:

The first repetition of repeating field changeType, creating it if it does not already exist {3}

getGenomeBuild

public CodeableConcept getGenomeBuild()

Returns:

genomeBuild (The reference genome build that is used in this analysis.)

hasGenomeBuild

public boolean hasGenomeBuild()

setGenomeBuild

public GenomicStudy.GenomicStudyAnalysisComponent setGenomeBuild(CodeableConcept value)

Parameters:

value - genomeBuild (The reference genome build that is used in this analysis.)

getInstantiatesCanonicalElement

public CanonicalType getInstantiatesCanonicalElement()

Returns:

instantiatesCanonical (The defined protocol that describes the analysis.). This is the underlying object with id, value and extensions. The accessor "getInstantiatesCanonical" gives direct access to the value

hasInstantiatesCanonicalElement

public boolean hasInstantiatesCanonicalElement()

hasInstantiatesCanonical

public boolean hasInstantiatesCanonical()

setInstantiatesCanonicalElement

public GenomicStudy.GenomicStudyAnalysisComponent setInstantiatesCanonicalElement(CanonicalType value)

Parameters:

value - instantiatesCanonical (The defined protocol that describes the analysis.). This is the underlying object with id, value and extensions. The accessor "getInstantiatesCanonical" gives direct access to the value

getInstantiatesCanonical

public String getInstantiatesCanonical()

Returns:

The defined protocol that describes the analysis.

setInstantiatesCanonical

public GenomicStudy.GenomicStudyAnalysisComponent setInstantiatesCanonical(String value)

Parameters:

value - The defined protocol that describes the analysis.

getInstantiatesUriElement

public UriType getInstantiatesUriElement()

Returns:

instantiatesUri (The URL pointing to an externally maintained protocol that describes the analysis.). This is the underlying object with id, value and extensions. The accessor "getInstantiatesUri" gives direct access to the value

hasInstantiatesUriElement

public boolean hasInstantiatesUriElement()

hasInstantiatesUri

public boolean hasInstantiatesUri()

setInstantiatesUriElement

public GenomicStudy.GenomicStudyAnalysisComponent setInstantiatesUriElement(UriType value)

Parameters:

value - instantiatesUri (The URL pointing to an externally maintained protocol that describes the analysis.). This is the underlying object with id, value and extensions. The accessor "getInstantiatesUri" gives direct access to the value

getInstantiatesUri

public String getInstantiatesUri()

Returns:

The URL pointing to an externally maintained protocol that describes the analysis.

setInstantiatesUri

public GenomicStudy.GenomicStudyAnalysisComponent setInstantiatesUri(String value)

Parameters:

value - The URL pointing to an externally maintained protocol that describes the analysis.

getTitleElement

public StringType getTitleElement()

Returns:

title (Name of the analysis event (human friendly).). This is the underlying object with id, value and extensions. The accessor "getTitle" gives direct access to the value

hasTitleElement

public boolean hasTitleElement()

hasTitle

public boolean hasTitle()

setTitleElement

public GenomicStudy.GenomicStudyAnalysisComponent setTitleElement(StringType value)

Parameters:

value - title (Name of the analysis event (human friendly).). This is the underlying object with id, value and extensions. The accessor "getTitle" gives direct access to the value

getTitle

public String getTitle()

Returns:

Name of the analysis event (human friendly).

setTitle

public GenomicStudy.GenomicStudyAnalysisComponent setTitle(String value)

Parameters:

value - Name of the analysis event (human friendly).

getFocus

public List<Reference> getFocus()

Returns:

focus (The focus of a genomic analysis when it is not the patient of record representing something or someone associated with the patient such as a spouse, parent, child, or sibling. For example, in trio testing, the GenomicStudy.subject would be the child (proband) and the GenomicStudy.analysis.focus of a specific analysis would be the parent.)

setFocus

public GenomicStudy.GenomicStudyAnalysisComponent setFocus(List<Reference> theFocus)

Returns:

Returns a reference to this for easy method chaining

hasFocus

public boolean hasFocus()

addFocus

public Reference addFocus()

addFocus

public GenomicStudy.GenomicStudyAnalysisComponent addFocus(Reference t)

getFocusFirstRep

public Reference getFocusFirstRep()

Returns:

The first repetition of repeating field focus, creating it if it does not already exist {3}

getSpecimen

public List<Reference> getSpecimen()

Returns:

specimen (The specimen used in the analysis event.)

setSpecimen

public GenomicStudy.GenomicStudyAnalysisComponent setSpecimen(List<Reference> theSpecimen)

Returns:

Returns a reference to this for easy method chaining

hasSpecimen

public boolean hasSpecimen()

addSpecimen

public Reference addSpecimen()

addSpecimen

public GenomicStudy.GenomicStudyAnalysisComponent addSpecimen(Reference t)

getSpecimenFirstRep

public Reference getSpecimenFirstRep()

Returns:

The first repetition of repeating field specimen, creating it if it does not already exist {3}

getDateElement

public DateTimeType getDateElement()

Returns:

date (The date of the analysis event.). This is the underlying object with id, value and extensions. The accessor "getDate" gives direct access to the value

hasDateElement

public boolean hasDateElement()

hasDate

public boolean hasDate()

setDateElement

public GenomicStudy.GenomicStudyAnalysisComponent setDateElement(DateTimeType value)

Parameters:

value - date (The date of the analysis event.). This is the underlying object with id, value and extensions. The accessor "getDate" gives direct access to the value

getDate

public Date getDate()

Returns:

The date of the analysis event.

setDate

public GenomicStudy.GenomicStudyAnalysisComponent setDate(Date value)

Parameters:

value - The date of the analysis event.

getNote

public List<Annotation> getNote()

Returns:

note (Any notes capture with the analysis event.)

setNote

public GenomicStudy.GenomicStudyAnalysisComponent setNote(List<Annotation> theNote)

Returns:

Returns a reference to this for easy method chaining

hasNote

public boolean hasNote()

addNote

public Annotation addNote()

addNote

public GenomicStudy.GenomicStudyAnalysisComponent addNote(Annotation t)

getNoteFirstRep

public Annotation getNoteFirstRep()

Returns:

The first repetition of repeating field note, creating it if it does not already exist {3}

getProtocolPerformed

public Reference getProtocolPerformed()

Returns:

protocolPerformed (The protocol that was performed for the analysis event.)

hasProtocolPerformed

public boolean hasProtocolPerformed()

setProtocolPerformed

public GenomicStudy.GenomicStudyAnalysisComponent setProtocolPerformed(Reference value)

Parameters:

value - protocolPerformed (The protocol that was performed for the analysis event.)

getRegionsStudied

public List<Reference> getRegionsStudied()

Returns:

regionsStudied (The genomic regions to be studied in the analysis (BED file).)

setRegionsStudied

public GenomicStudy.GenomicStudyAnalysisComponent setRegionsStudied(List<Reference> theRegionsStudied)

Returns:

Returns a reference to this for easy method chaining

hasRegionsStudied

public boolean hasRegionsStudied()

addRegionsStudied

public Reference addRegionsStudied()

addRegionsStudied

public GenomicStudy.GenomicStudyAnalysisComponent addRegionsStudied(Reference t)

getRegionsStudiedFirstRep

public Reference getRegionsStudiedFirstRep()

Returns:

The first repetition of repeating field regionsStudied, creating it if it does not already exist {3}

getRegionsCalled

public List<Reference> getRegionsCalled()

Returns:

regionsCalled (Genomic regions actually called in the analysis event (BED file).)

setRegionsCalled

public GenomicStudy.GenomicStudyAnalysisComponent setRegionsCalled(List<Reference> theRegionsCalled)

Returns:

Returns a reference to this for easy method chaining

hasRegionsCalled

public boolean hasRegionsCalled()

addRegionsCalled

public Reference addRegionsCalled()

addRegionsCalled

public GenomicStudy.GenomicStudyAnalysisComponent addRegionsCalled(Reference t)

getRegionsCalledFirstRep

public Reference getRegionsCalledFirstRep()

Returns:

The first repetition of repeating field regionsCalled, creating it if it does not already exist {3}

getInput

public List<GenomicStudy.GenomicStudyAnalysisInputComponent> getInput()

Returns:

input (Inputs for the analysis event.)

setInput

public GenomicStudy.GenomicStudyAnalysisComponent setInput(List<GenomicStudy.GenomicStudyAnalysisInputComponent> theInput)

Returns:

Returns a reference to this for easy method chaining

hasInput

public boolean hasInput()

addInput

public GenomicStudy.GenomicStudyAnalysisInputComponent addInput()

addInput

public GenomicStudy.GenomicStudyAnalysisComponent addInput(GenomicStudy.GenomicStudyAnalysisInputComponent t)

getInputFirstRep

public GenomicStudy.GenomicStudyAnalysisInputComponent getInputFirstRep()

Returns:

The first repetition of repeating field input, creating it if it does not already exist {3}

getOutput

public List<GenomicStudy.GenomicStudyAnalysisOutputComponent> getOutput()

Returns:

output (Outputs for the analysis event.)

setOutput

public GenomicStudy.GenomicStudyAnalysisComponent setOutput(List<GenomicStudy.GenomicStudyAnalysisOutputComponent> theOutput)

Returns:

Returns a reference to this for easy method chaining

hasOutput

public boolean hasOutput()

addOutput

public GenomicStudy.GenomicStudyAnalysisOutputComponent addOutput()

addOutput

public GenomicStudy.GenomicStudyAnalysisComponent addOutput(GenomicStudy.GenomicStudyAnalysisOutputComponent t)

getOutputFirstRep

public GenomicStudy.GenomicStudyAnalysisOutputComponent getOutputFirstRep()

Returns:

The first repetition of repeating field output, creating it if it does not already exist {3}

getPerformer

public List<GenomicStudy.GenomicStudyAnalysisPerformerComponent> getPerformer()

Returns:

performer (Performer for the analysis event.)

setPerformer

public GenomicStudy.GenomicStudyAnalysisComponent setPerformer(List<GenomicStudy.GenomicStudyAnalysisPerformerComponent> thePerformer)

Returns:

Returns a reference to this for easy method chaining

hasPerformer

public boolean hasPerformer()

addPerformer

public GenomicStudy.GenomicStudyAnalysisPerformerComponent addPerformer()

addPerformer

public GenomicStudy.GenomicStudyAnalysisComponent addPerformer(GenomicStudy.GenomicStudyAnalysisPerformerComponent t)

getPerformerFirstRep

public GenomicStudy.GenomicStudyAnalysisPerformerComponent getPerformerFirstRep()

Returns:

The first repetition of repeating field performer, creating it if it does not already exist {3}

getDevice

public List<GenomicStudy.GenomicStudyAnalysisDeviceComponent> getDevice()

Returns:

device (Devices used for the analysis (e.g., instruments, software), with settings and parameters.)

setDevice

public GenomicStudy.GenomicStudyAnalysisComponent setDevice(List<GenomicStudy.GenomicStudyAnalysisDeviceComponent> theDevice)

Returns:

Returns a reference to this for easy method chaining

hasDevice

public boolean hasDevice()

addDevice

public GenomicStudy.GenomicStudyAnalysisDeviceComponent addDevice()

addDevice

public GenomicStudy.GenomicStudyAnalysisComponent addDevice(GenomicStudy.GenomicStudyAnalysisDeviceComponent t)

getDeviceFirstRep

public GenomicStudy.GenomicStudyAnalysisDeviceComponent getDeviceFirstRep()

Returns:

The first repetition of repeating field device, creating it if it does not already exist {3}

listChildren

protected void listChildren(List<Property> children)

Overrides:

listChildren in class BackboneElement

getNamedProperty

public Property getNamedProperty(int _hash,
 String _name,
 boolean _checkValid)
                          throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getNamedProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

getProperty

public Base[] getProperty(int hash,
 String name,
 boolean checkValid)
                   throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

setProperty

public Base setProperty(int hash,
 String name,
 Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

setProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

setProperty

public Base setProperty(String name,
 Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

setProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

removeChild

public void removeChild(String name,
 Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

removeChild in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

makeProperty

public Base makeProperty(int hash,
 String name)
                  throws org.hl7.fhir.exceptions.FHIRException

Overrides:

makeProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

getTypesForProperty

public String[] getTypesForProperty(int hash,
 String name)
                             throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getTypesForProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

addChild

public Base addChild(String name)
              throws org.hl7.fhir.exceptions.FHIRException

Overrides:

addChild in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

copy

public GenomicStudy.GenomicStudyAnalysisComponent copy()

Specified by:

copy in class BackboneElement

copyValues

public void copyValues(GenomicStudy.GenomicStudyAnalysisComponent dst)

equalsDeep

public boolean equalsDeep(Base other_)

Overrides:

equalsDeep in class BackboneElement

equalsShallow

public boolean equalsShallow(Base other_)

Overrides:

equalsShallow in class BackboneElement

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface org.hl7.fhir.instance.model.api.IBase

Overrides:

isEmpty in class BackboneElement

fhirType

public String fhirType()

Specified by:

fhirType in interface org.hl7.fhir.instance.model.api.IBase

Overrides:

fhirType in class BackboneElement

Returns:

the FHIR type name of the instance (not the java class name)